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Index

_ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

_

__init__() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
(nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.gmm.GridDescriptor method)
(nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
(nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
(nipy.algorithms.interpolation.ImageInterpolator method)
(nipy.algorithms.kernel_smooth.LinearFilter method)
(nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.chain_transform.ChainTransform method)
(nipy.algorithms.registration.grid_transform.GridTransform method)
(nipy.algorithms.registration.grid_transform.SplineTransform method)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Image4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
(nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
(nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
(nipy.algorithms.registration.spline_transform.SplineTransform method)
(nipy.algorithms.registration.transform.Transform method)
(nipy.algorithms.segmentation.vem.VEM method)
(nipy.algorithms.statistics.classification.Classifier method)
(nipy.algorithms.statistics.empirical_pvalue.FDR method)
(nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
(nipy.algorithms.statistics.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.regression.AREstimator method)
(nipy.algorithms.statistics.regression.ArrayOutput method)
(nipy.algorithms.statistics.regression.RegressionOutput method)
(nipy.algorithms.statistics.regression.RegressionOutputList method)
(nipy.algorithms.statistics.regression.TOutput method)
(nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.ECquasi method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.IntrinsicVolumes method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.algorithms.statistics.rft.fnsum method)
(nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.image.SliceMaker method)
(nipy.core.image.image_list.ImageList method)
(nipy.core.image.roi.ContinuousROI method)
(nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
(nipy.core.image.roi.ROI method)
(nipy.core.image.roi.ROISequence method)
(nipy.core.image.roi.ROIall method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.array_coords.ArrayCoordMap method)
(nipy.core.reference.array_coords.Grid method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
(nipy.core.reference.coordinate_system.CoordinateSystem method)
(nipy.core.reference.coordinate_system.CoordinateSystemError method)
(nipy.core.transforms.affines.OrientationError method)
(nipy.interfaces.spm.SpmInfo method)
(nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.CompositionError method)
(nipy.labs.datasets.transforms.transform.Transform method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
(nipy.labs.glm.glm.contrast method)
(nipy.labs.glm.glm.glm method)
(nipy.labs.group.displacement_field.displacement_field method)
(nipy.labs.group.displacement_field.gaussian_random_field method)
(nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
(nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.MeshDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.MultiROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
(nipy.labs.statistical_mapping.LinearModel method)
(nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
(nipy.modalities.fmri.design_matrix.DesignMatrix method)
(nipy.modalities.fmri.experimental_paradigm.BlockParadigm method)
(nipy.modalities.fmri.experimental_paradigm.EventRelatedParadigm method)
(nipy.modalities.fmri.experimental_paradigm.Paradigm method)
(nipy.modalities.fmri.fmri.FmriImageList method)
(nipy.modalities.fmri.fmristat.delay.Contrast method)
(nipy.modalities.fmri.fmristat.model.AR1 method)
(nipy.modalities.fmri.fmristat.model.ModelOutputImage method)
(nipy.modalities.fmri.fmristat.model.OLS method)
(nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.Factor method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Formula method)
(nipy.modalities.fmri.formula.RandomEffects method)
(nipy.modalities.fmri.formula.Term method)
(nipy.modalities.fmri.spm.model.SecondStage method)
(nipy.utils.onetime.OneTimeProperty method)
(nipy.utils.tmpdirs.InTemporaryDirectory method)
(nipy.utils.tmpdirs.TemporaryDirectory method)

A

adjacency() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
adjust_subsampling() (in module nipy.algorithms.registration.groupwise_registration)
Affine (class in nipy.algorithms.registration.affine)
affine (nipy.algorithms.registration.grid_transform.GridTransform attribute)
(nipy.algorithms.registration.grid_transform.SplineTransform attribute)
(nipy.core.image.affine_image.AffineImage attribute)
(nipy.core.image.xyz_image.XYZImage attribute)
affine() (nipy.core.image.image.Image static method)
Affine2D (class in nipy.algorithms.registration.affine)
affine_img_src() (in module nipy.labs.viz_tools.maps_3d), [1]
affine_transform_from_array() (in module nipy.io.nifti_ref)
AffineImage (class in nipy.core.image.affine_image)
AffineTransform (class in nipy.core.reference.coordinate_map)
(class in nipy.labs.datasets.transforms.affine_transform)
AFNI
align_to_refscan() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
all_distances() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
all_fdr() (nipy.algorithms.statistics.empirical_pvalue.FDR method)
all_fdr_gaussian() (in module nipy.algorithms.statistics.empirical_pvalue)
alpha_cmap() (in module nipy.labs.viz_tools.cm)
annotate() (nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
anti_symmeterize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
append (nipy.core.image.roi.ROISequence attribute)
append_io_dim() (in module nipy.core.reference.coordinate_map)
apply() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.chain_transform.ChainTransform method)
(nipy.algorithms.registration.spline_transform.SplineTransform method)
(nipy.algorithms.registration.transform.Transform method)
apply_affine() (in module nipy.algorithms.registration.affine)
(in module nipy.labs.datasets.transforms.affine_utils)
apply_orientation() (in module nipy.core.transforms.affines)
AR1 (class in nipy.modalities.fmri.fmristat.model)
ARcomponents() (in module nipy.modalities.fmri.spm.correlation)
ARcovariance() (in module nipy.modalities.fmri.spm.correlation)
area() (nipy.labs.spatial_models.discrete_domain.MeshDomain method)
AREstimator (class in nipy.algorithms.statistics.regression)
argmax_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
args (nipy.core.reference.coordinate_system.CoordinateSystemError attribute)
(nipy.core.transforms.affines.OrientationError attribute)
(nipy.labs.datasets.transforms.transform.CompositionError attribute)
(nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
array_affine_coord() (in module nipy.labs.spatial_models.discrete_domain)
ArrayCoordMap (class in nipy.core.reference.array_coords)
ArrayOutput (class in nipy.algorithms.statistics.regression)
as_affine() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
as_base_exp() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_basic() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_coeff_exponent() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_coeff_factors() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_coeff_terms() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_coefficient() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_displacements() (nipy.algorithms.registration.grid_transform.GridTransform method)
(nipy.algorithms.registration.grid_transform.SplineTransform method)
as_dummy() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_image() (in module nipy.io.files)
as_independent() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_leading_term() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_numer_denom() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_poly() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_powers_dict() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_real_imag() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
as_unittest() (in module nipy.testing.lightunit)
as_volume_img() (in module nipy.labs.datasets.converters)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
assumptions0 (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
atoms() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
autocrop_img() (in module nipy.labs.viz_tools.maps_3d)
average_link_graph() (in module nipy.algorithms.clustering.hierarchical_clustering)
average_link_graph_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
average_log_like() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
averaged_loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
axes() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
(nipy.core.image.xyz_image.XYZImage static method)

B

ball_search() (in module nipy.algorithms.statistics.rft)
bayes_factor() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
best_fitting_GMM() (in module nipy.algorithms.clustering.gmm)
Beta (class in nipy.modalities.fmri.formula)
BGMM (class in nipy.algorithms.clustering.bgmm)
bic() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
binomial() (in module nipy.algorithms.statistics.rft)
bipartite_graph_from_adjacency() (in module nipy.algorithms.graph.bipartite_graph)
bipartite_graph_from_coo_matrix() (in module nipy.algorithms.graph.bipartite_graph)
BipartiteGraph (class in nipy.algorithms.graph.bipartite_graph)
BlockParadigm (class in nipy.modalities.fmri.experimental_paradigm)
blocks() (in module nipy.modalities.fmri.utils)
BOLD
bonferroni() (in module nipy.labs.statistical_mapping)
bootstrap_group() (in module nipy.labs.utils.reproducibility_measures)
bounding_box() (in module nipy.core.reference.slices)
brain_segmentation() (in module nipy.algorithms.segmentation.brain_segmentation)
BrainVisa
bsa_dpmm() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
bsa_dpmm2() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
BSD
build_LR() (in module nipy.labs.spatial_models.structural_bfls)

C

calibrate() (nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
cc() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
centers() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
ChainTransform (class in nipy.algorithms.registration.chain_transform)
change_exponent() (nipy.algorithms.statistics.rft.ECquasi method)
check() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
check_compatible_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
check_deps() (in module nipy.utils.perlpie)
check_feature_matrices() (in module nipy.algorithms.graph.bipartite_graph)
check_features() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
check_pv() (nipy.algorithms.statistics.empirical_pvalue.FDR method)
check_x() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
ChiBarSquared (class in nipy.algorithms.statistics.rft)
ChiSquared (class in nipy.algorithms.statistics.rft)
clamp() (in module nipy.algorithms.registration.histogram_registration)
Classifier (class in nipy.algorithms.statistics.classification)
cleanup() (nipy.utils.tmpdirs.InTemporaryDirectory method)
(nipy.utils.tmpdirs.TemporaryDirectory method)
cliques() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
closing() (nipy.algorithms.graph.field.Field method)
cluster_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
cluster_stats() (in module nipy.labs.statistical_mapping)
cluster_threshold() (in module nipy.labs.utils.reproducibility_measures)
co_labelling() (in module nipy.algorithms.clustering.imm)
coeff() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
coefs (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
combinations() (in module nipy.algorithms.statistics.utils)
compact_neighb() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
compare() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
compare_pretty() (nipy.modalities.fmri.formula.Beta static method)
(nipy.modalities.fmri.formula.FactorTerm static method)
(nipy.modalities.fmri.formula.Term static method)
compatible() (nipy.algorithms.statistics.rft.ECquasi method)
complete_graph() (in module nipy.algorithms.graph.graph)
complex() (in module nipy.algorithms.statistics.utils)
component_likelihood() (nipy.algorithms.clustering.ggmixture.GGGM method)
compose() (in module nipy.core.reference.coordinate_map)
(nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.spline_transform.SplineTransform method)
(nipy.algorithms.registration.transform.Transform method)
composed_with() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.Transform method)
composed_with_transform() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
CompositionError (class in nipy.labs.datasets.transforms.transform)
compute_BSA_loo() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
compute_BSA_quick() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
compute_BSA_simple() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
compute_children() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
compute_cluster_stats() (in module nipy.labs.group.permutation_test)
compute_conditional_posterior_mean() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_individual_regions() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
compute_inner_blocks() (nipy.labs.group.displacement_field.displacement_field method)
compute_log_conditional_displacements_posterior() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_conditional_posterior() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_posterior() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_prior() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_region_likelihood() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_region_likelihood_slow() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_log_voxel_likelihood() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_marginal_likelihood() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
compute_mask() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_mask_files() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_mask_sessions() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_region_stat() (in module nipy.labs.group.permutation_test)
compute_regressor() (in module nipy.modalities.fmri.hemodynamic_models)
concatenate_graphs() (in module nipy.algorithms.graph.graph)
conditional_posterior_proba() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
conjugate() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
conjunction() (in module nipy.labs.utils.reproducibility_measures)
connected_components() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
constrained_voronoi() (nipy.algorithms.graph.field.Field method)
ContinuousROI (class in nipy.core.image.roi)
contour_map() (nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
contrast (class in nipy.labs.glm.glm)
Contrast (class in nipy.modalities.fmri.fmristat.delay)
contrast() (nipy.labs.glm.glm.glm method)
(nipy.labs.statistical_mapping.LinearModel method)
contrast_from_cols_or_rows() (in module nipy.modalities.fmri.formula)
convolve_functions() (in module nipy.modalities.fmri.utils)
coord_bsa() (in module nipy.labs.utils.reproducibility_measures)
coord_dtype (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
coord_transform() (in module nipy.labs.viz_tools.coord_tools)
CoordinateMap (class in nipy.core.reference.coordinate_map)
CoordinateMapROI (class in nipy.core.image.roi)
CoordinateSystem (class in nipy.core.reference.coordinate_system)
CoordinateSystemError (class in nipy.core.reference.coordinate_system)
copy() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
CorrelationCoefficient (class in nipy.algorithms.registration.similarity_measures)
CorrelationRatio (class in nipy.algorithms.registration.similarity_measures)
CorrelationRatioL1 (class in nipy.algorithms.registration.similarity_measures)
could_extract_minus_sign() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
count (nipy.core.image.roi.ROISequence attribute)
count_ops() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
cov() (nipy.modalities.fmri.formula.RandomEffects method)
cross_eps() (in module nipy.algorithms.graph.bipartite_graph)
cross_knn() (in module nipy.algorithms.graph.bipartite_graph)
cross_validated_update() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
cube_with_strides_center() (in module nipy.algorithms.statistics.utils)
custom_watershed() (nipy.algorithms.graph.field.Field method)
cut_redundancies() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)

D

data_generator() (in module nipy.core.image.generators)
decompose2d() (in module nipy.algorithms.statistics.utils)
decompose3d() (in module nipy.algorithms.statistics.utils)
define() (in module nipy.modalities.fmri.formula)
(in module nipy.modalities.fmri.utils)
define_graph_attributes() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
degrees() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
demo_ortho_slicer() (in module nipy.labs.viz_tools.ortho_slicer)
demo_plot_map() (in module nipy.labs.viz_tools.activation_maps)
demo_plot_map_3d() (in module nipy.labs.viz_tools.maps_3d)
denom_poly() (nipy.algorithms.statistics.rft.ECquasi method)
density() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
density_per_component() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
depth_from_leaves() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
deriv() (nipy.algorithms.statistics.rft.ECquasi method)
design() (nipy.modalities.fmri.formula.Factor method)
(nipy.modalities.fmri.formula.Formula method)
(nipy.modalities.fmri.formula.RandomEffects method)
design_expr (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
DesignMatrix (class in nipy.modalities.fmri.design_matrix)
detsh() (in module nipy.algorithms.clustering.bgmm)
diff() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
diffusion() (nipy.algorithms.graph.field.Field method)
dijkstra() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
dilation() (nipy.algorithms.graph.field.Field method)
dim_cmap() (in module nipy.labs.viz_tools.cm)
dirichlet_eval() (in module nipy.algorithms.clustering.bgmm)
DiscreteDomain (class in nipy.labs.spatial_models.discrete_domain)
DiscreteParzenMutualInformation (class in nipy.algorithms.registration.similarity_measures)
DiscreteROI (class in nipy.core.image.roi)
displacement_field (class in nipy.labs.group.displacement_field)
dist2loss() (in module nipy.algorithms.registration.similarity_measures)
dkl_dirichlet() (in module nipy.algorithms.clustering.bgmm)
dkl_gaussian() (in module nipy.algorithms.clustering.bgmm)
dkl_wishart() (in module nipy.algorithms.clustering.bgmm)
dmtx_from_csv() (in module nipy.modalities.fmri.design_matrix)
dmtx_light() (in module nipy.modalities.fmri.design_matrix)
doit() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
domain_from_array() (in module nipy.labs.spatial_models.discrete_domain)
domain_from_image() (in module nipy.labs.spatial_models.discrete_domain)
domain_from_mesh() (in module nipy.labs.spatial_models.discrete_domain)
dpmm() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
draw_cross() (nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
draw_samples() (in module nipy.labs.utils.reproducibility_measures)
drop_io_dim() (in module nipy.core.reference.coordinate_map)
DTI
dtype (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
dummy_index (nipy.modalities.fmri.formula.Beta attribute)
dump() (nipy.labs.statistical_mapping.LinearModel method)
DWI

E

ECcone (class in nipy.algorithms.statistics.rft)
ECquasi (class in nipy.algorithms.statistics.rft)
edge_map() (nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
EEGlab
em() (in module nipy.labs.group.mixed_effects)
eps_nn() (in module nipy.algorithms.graph.graph)
equivalent() (in module nipy.core.reference.coordinate_map)
erosion() (nipy.algorithms.graph.field.Field method)
Estep() (nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
estimate() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
(nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
estimate_displacements_SA() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
estimate_instant_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
estimate_mean() (in module nipy.algorithms.statistics.onesample)
estimate_means() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
estimate_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
estimate_pooled_covariance() (in module nipy.modalities.fmri.spm.model)
estimate_robust_vmm() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
estimate_varatio() (in module nipy.algorithms.statistics.onesample)
estimate_weights() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
estimateAR() (in module nipy.modalities.fmri.fmristat.model)
euclidean_distance() (in module nipy.algorithms.routines.fast_distance)
eval() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
evalf() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
evaluate() (nipy.algorithms.interpolation.ImageInterpolator method)
(nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
event_design() (in module nipy.modalities.fmri.design)
EventRelatedParadigm (class in nipy.modalities.fmri.experimental_paradigm)
events() (in module nipy.modalities.fmri.utils)
evidence() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
example_cv_nonoise() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
example_noisy() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
execute() (nipy.modalities.fmri.fmristat.model.AR1 method)
(nipy.modalities.fmri.fmristat.model.OLS method)
(nipy.modalities.fmri.spm.model.SecondStage method)
expand() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
explore() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
extend (nipy.core.image.roi.ROISequence attribute)
extract_additively() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
extract_clusters_from_diam() (in module nipy.labs.group.permutation_test)
extract_clusters_from_graph() (in module nipy.labs.group.permutation_test)
extract_clusters_from_thresh() (in module nipy.labs.group.permutation_test)
extract_multiplicatively() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)

F

f_generator() (in module nipy.core.image.generators)
Factor (class in nipy.modalities.fmri.formula)
FactorTerm (class in nipy.modalities.fmri.formula)
fancy_plot() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
fancy_plot_() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
fdiff() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
FDR (class in nipy.algorithms.statistics.empirical_pvalue)
fdr() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
fdrcurve() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
feature() (nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
(nipy.core.image.roi.ROIall method)
Field (class in nipy.algorithms.graph.field)
field_from_coo_matrix_and_data() (in module nipy.algorithms.graph.field)
field_from_graph_and_data() (in module nipy.algorithms.graph.field)
find_cut_coords() (in module nipy.labs.viz_tools.coord_tools)
find_mni_template() (in module nipy.labs.viz_tools.anat_cache)
fit() (nipy.algorithms.statistics.classification.Classifier method)
(nipy.algorithms.statistics.nlsmodel.NLSModel method)
(nipy.labs.glm.glm.glm method)
fixed_parcellation() (in module nipy.labs.spatial_models.parcel_io)
flip() (in module nipy.core.image.xyz_image)
flip_axis() (in module nipy.core.transforms.affines)
floyd() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
fltcols() (in module nipy.interfaces.spm)
Fmask() (in module nipy.modalities.fmri.spm.model)
fmin_steepest() (in module nipy.algorithms.optimize)
FMRI
fmri_generator() (in module nipy.modalities.fmri.fmri)
FmriImageList (class in nipy.modalities.fmri.fmri)
FmriRealign4d (class in nipy.algorithms.registration.groupwise_registration)
fname_presuffix() (in module nipy.interfaces.spm)
fnames_presuffix() (in module nipy.interfaces.spm)
fnsum (class in nipy.algorithms.statistics.rft)
Forest (class in nipy.algorithms.graph.forest)
Formula (class in nipy.modalities.fmri.formula)
formula (nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
fourier_basis() (in module nipy.modalities.fmri.design)
(in module nipy.modalities.fmri.utils)
free_energy() (nipy.algorithms.segmentation.vem.VEM method)
from_3d_grid() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
from_image() (nipy.core.image.image_list.ImageList class method)
(nipy.core.image.xyz_image.XYZImage static method)
(nipy.modalities.fmri.fmri.FmriImageList class method)
from_matrix_vector() (in module nipy.core.transforms.affines)
(in module nipy.labs.datasets.transforms.affine_utils)
from_params() (nipy.core.image.xyz_image.XYZTransform static method)
(nipy.core.reference.coordinate_map.AffineTransform static method)
from_shape() (nipy.core.reference.array_coords.ArrayCoordMap static method)
from_start_step() (nipy.core.image.xyz_image.XYZTransform static method)
(nipy.core.reference.coordinate_map.AffineTransform static method)
fromarray() (in module nipy.core.image.image)
fromcol() (nipy.modalities.fmri.formula.Factor static method)
fromrec() (nipy.modalities.fmri.formula.Factor static method)
(nipy.modalities.fmri.formula.Formula static method)
(nipy.modalities.fmri.formula.RandomEffects static method)
FSL
FStat (class in nipy.algorithms.statistics.rft)
fttest() (in module nipy.labs.utils.reproducibility_measures)
fullrank() (in module nipy.modalities.fmri.formula)
func (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
fusion() (in module nipy.algorithms.clustering.hierarchical_clustering)
fwhm2resel() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
fwhm2sigma() (in module nipy.algorithms.kernel_smooth)

G

Gamma (class in nipy.algorithms.clustering.ggmixture)
gamma_difference_hrf() (in module nipy.modalities.fmri.hemodynamic_models)
gamma_expr() (in module nipy.modalities.fmri.hrf)
Gamma_Gaussian_fit() (in module nipy.algorithms.statistics.empirical_pvalue)
gamma_params() (in module nipy.modalities.fmri.hrf)
gauss_dist() (in module nipy.algorithms.segmentation.vem)
gaussian_fdr_threshold() (in module nipy.algorithms.statistics.empirical_pvalue)
gaussian_random_field (class in nipy.labs.group.displacement_field)
generate_normals() (in module nipy.algorithms.clustering.bgmm)
generate_output() (in module nipy.modalities.fmri.fmristat.model)
generate_perm() (in module nipy.algorithms.clustering.bgmm)
generate_Wishart() (in module nipy.algorithms.clustering.bgmm)
geodesic_kmeans() (nipy.algorithms.graph.field.Field method)
get_3d_peaks() (in module nipy.labs.statistical_mapping)
get_bounds() (in module nipy.labs.datasets.transforms.affine_utils)
get_children() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
get_cluster_position_from_thresholded_map() (in module nipy.labs.utils.reproducibility_measures)
get_coord() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_data() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_descendents() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
get_E() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
get_field() (nipy.algorithms.graph.field.Field method)
get_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
get_home_dir() (in module nipy.utils.environment)
get_inverse() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.Transform method)
get_k() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
get_local_maxima() (nipy.algorithms.graph.field.Field method)
get_mask_bounds() (in module nipy.labs.viz_tools.coord_tools)
get_nipy_system_dir() (in module nipy.utils.environment)
get_nipy_user_dir() (in module nipy.utils.environment)
get_parents() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
get_peak_position_from_thresholded_map() (in module nipy.labs.utils.reproducibility_measures)
get_pkg_info() (in module nipy.pkg_info)
get_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.MultiROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_size() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_term() (nipy.modalities.fmri.formula.Factor method)
get_transform() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_V() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_vertices() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_volume() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_weights() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_world_coords() (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
getO() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
getomega() (nipy.algorithms.statistics.nlsmodel.NLSModel method)
getparams() (in module nipy.modalities.fmri.formula)
getterms() (in module nipy.modalities.fmri.formula)
getTestCaseNames() (in module nipy.testing.nosepatch)
getZ() (nipy.algorithms.statistics.nlsmodel.NLSModel method)
GGGM (class in nipy.algorithms.clustering.ggmixture)
GGM (class in nipy.algorithms.clustering.ggmixture)
glm (class in nipy.labs.glm.glm)
glover_hrf() (in module nipy.modalities.fmri.hemodynamic_models)
glover_time_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
GMM (class in nipy.algorithms.clustering.gmm)
GPL
Graph (class in nipy.algorithms.graph.graph)
graph_3d_grid() (in module nipy.algorithms.graph.graph)
Grid (class in nipy.core.reference.array_coords)
grid_domain_from_array() (in module nipy.labs.spatial_models.discrete_domain)
grid_domain_from_image() (in module nipy.labs.spatial_models.discrete_domain)
GridDescriptor (class in nipy.algorithms.clustering.gmm)
GridTransform (class in nipy.algorithms.registration.grid_transform)
group_reproducibility_metrics() (in module nipy.labs.utils.reproducibility_measures)
guess_priors() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
guess_regularizing() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)

H

has() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
has_all_symbols() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
has_any_symbols() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
has_piecewise (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
header (nipy.core.image.affine_image.AffineImage attribute)
(nipy.core.image.image.Image attribute)
(nipy.core.image.xyz_image.XYZImage attribute)
height_threshold() (nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
HierarchicalROI (class in nipy.labs.spatial_models.hroi)
highest_neighbor() (nipy.algorithms.graph.field.Field method)
histo_repro() (in module nipy.labs.utils.reproducibility_measures)
HistogramRegistration (class in nipy.algorithms.registration.histogram_registration)
homogeneity() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
Hotelling (class in nipy.algorithms.statistics.rft)
hparcel() (in module nipy.labs.spatial_models.hierarchical_parcellation)
hpd() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
hroi_agglomeration() (in module nipy.labs.spatial_models.hroi)
HROI_as_discrete_domain_blobs() (in module nipy.labs.spatial_models.hroi)
HROI_from_watershed() (in module nipy.labs.spatial_models.hroi)

I

ICA
ideal_spacing() (in module nipy.algorithms.registration.histogram_registration)
identity() (nipy.core.image.xyz_image.XYZTransform static method)
(nipy.core.reference.coordinate_map.AffineTransform static method)
idx_affine_coord() (in module nipy.labs.spatial_models.discrete_domain)
if_datasource() (in module nipy.testing.decorators)
if_example_data() (in module nipy.testing.decorators)
if_templates() (in module nipy.testing.decorators)
IJK() (nipy.algorithms.registration.grid_transform.GridTransform method)
(nipy.algorithms.registration.grid_transform.SplineTransform method)
Image (class in nipy.core.image.image)
Image4d (class in nipy.algorithms.registration.groupwise_registration)
ImageInterpolator (class in nipy.algorithms.interpolation)
ImageList (class in nipy.core.image.image_list)
IMM (class in nipy.algorithms.clustering.imm)
index (nipy.core.image.roi.ROISequence attribute)
index() (nipy.core.reference.coordinate_system.CoordinateSystem method)
init() (nipy.algorithms.clustering.ggmixture.GGGM method)
init_displacement_blocks() (nipy.labs.group.displacement_field.displacement_field method)
init_fdr() (nipy.algorithms.clustering.ggmixture.GGGM method)
init_hidden_variables() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
init_instant_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
initialize() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.statistics.classification.Classifier method)
(nipy.algorithms.statistics.nlsmodel.NLSModel method)
initialize_and_estimate() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
initialize_parameters() (in module nipy.algorithms.segmentation.brain_segmentation)
insert (nipy.core.image.roi.ROISequence attribute)
integ() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.ECquasi method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
integrate() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
InTemporaryDirectory (class in nipy.utils.tmpdirs)
interp (nipy.algorithms.registration.histogram_registration.HistogramRegistration attribute)
interp() (in module nipy.modalities.fmri.utils)
interp_slice_order() (in module nipy.algorithms.registration.groupwise_registration)
intersect_masks() (in module nipy.labs.mask)
IntrinsicVolumes (class in nipy.algorithms.statistics.rft)
inv() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
inverse() (nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
inverse_affine() (in module nipy.algorithms.registration.affine)
inverse_mapping() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
invertR() (in module nipy.modalities.fmri.fmristat.invert)
io_orientation() (in module nipy.core.transforms.affines)
is_bounded (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_commutative (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_complex (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_composite (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_connected() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
is_direct (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
is_even (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_factor() (in module nipy.modalities.fmri.formula)
is_factor_term() (in module nipy.modalities.fmri.formula)
is_finite (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_formula() (in module nipy.modalities.fmri.formula)
is_hypergeometric() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
is_image() (in module nipy.core.image.image)
is_imaginary (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_infinitesimal (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_integer (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_irrational (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_negative (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_noninteger (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_nonnegative (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_nonpositive (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_nonzero (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_number (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_odd (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_polynomial() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
is_positive (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_prime (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_rational (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_rational_function() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
is_real (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_term() (in module nipy.modalities.fmri.formula)
is_unbounded (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
is_zero (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
isleaf() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
isolated() (in module nipy.labs.utils.random_threshold)
isroot() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
iter_basic_args() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)

J

join_complexes() (in module nipy.algorithms.statistics.utils)

K

kmeans() (in module nipy.algorithms.clustering.clustering)
knn() (in module nipy.algorithms.graph.graph)
knownfailure() (in module nipy.testing.decorators)
kruskal() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)

L

lambdify_t() (in module nipy.modalities.fmri.utils)
LandmarkRegions (class in nipy.labs.spatial_models.structural_bfls)
laplace_dist() (in module nipy.algorithms.segmentation.vem)
largest_cc() (in module nipy.labs.mask)
leadterm() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
learn() (nipy.algorithms.statistics.classification.Classifier method)
(nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
leaves_of_a_subtree() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
left_incidence() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
LGPL
like_from_data() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
likelihood() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
likelihood_under_the_prior() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
lil_cc() (in module nipy.algorithms.graph.graph)
limit() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
linear_interp() (in module nipy.modalities.fmri.utils)
linear_model_fit() (in module nipy.labs.statistical_mapping)
LinearFilter (class in nipy.algorithms.kernel_smooth)
LinearModel (class in nipy.labs.statistical_mapping)
list_of_neighbors() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
list_of_subtrees() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
load() (in module nipy.io.files)
(in module nipy.labs.glm.glm)
load_protocol_from_csv_file() (in module nipy.modalities.fmri.experimental_paradigm)
local_maxima() (nipy.algorithms.graph.field.Field method)
log_density_per_component() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
log_gammainv_pdf() (in module nipy.labs.group.spatial_relaxation_onesample)
log_gaussian_pdf() (in module nipy.labs.group.spatial_relaxation_onesample)
log_likelihood_ratio() (in module nipy.labs.group.mixed_effects)
log_weighted_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
lseries() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)

M

m2screenshot() (in module nipy.labs.viz_tools.maps_3d)
main() (in module nipy.algorithms.clustering.imm)
(in module nipy.testing.nitest)
(in module nipy.utils.perlpie)
main_cc() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
main_effect (nipy.modalities.fmri.formula.Factor attribute)
make_bsa_image() (in module nipy.labs.spatial_models.bsa_io)
make_dmtx() (in module nipy.modalities.fmri.design_matrix)
make_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
make_feature_from_image() (nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
make_forest() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
make_graph() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
make_grid() (in module nipy.algorithms.registration.groupwise_registration)
(nipy.algorithms.clustering.gmm.GridDescriptor method)
make_hroi_from_subdomain() (in module nipy.labs.spatial_models.hroi)
make_job() (in module nipy.interfaces.spm)
make_label_dec() (in module nipy.testing.decorators)
make_recarray() (in module nipy.modalities.fmri.formula)
map_label() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
map_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
mapping() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
mask() (nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.ROIall method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
mask_parcellation() (in module nipy.labs.spatial_models.parcel_io)
match() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
matches() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
Matlab
matrix44() (in module nipy.algorithms.registration.affine)
matrix_generator() (in module nipy.core.image.generators)
max_dist() (in module nipy.labs.group.permutation_test)
mean (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
merge_ascending() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
merge_descending() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
merge_simple_branches() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
MeshDomain (class in nipy.labs.spatial_models.discrete_domain)
message (nipy.core.reference.coordinate_system.CoordinateSystemError attribute)
(nipy.core.transforms.affines.OrientationError attribute)
(nipy.labs.datasets.transforms.transform.CompositionError attribute)
mfx_ttest() (in module nipy.labs.utils.reproducibility_measures)
MixedIMM (class in nipy.algorithms.clustering.imm)
mixture_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
mixture_likelihood() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
mlab_tempfile() (in module nipy.interfaces.matlab)
model_generator() (in module nipy.modalities.fmri.fmristat.model)
ModelOutputImage (class in nipy.modalities.fmri.fmristat.model)
mst() (in module nipy.algorithms.graph.graph)
Mstep() (nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
mu_ball() (in module nipy.algorithms.statistics.rft)
mu_sphere() (in module nipy.algorithms.statistics.rft)
MultilinearForm (class in nipy.algorithms.statistics.rft)
multinomial() (in module nipy.algorithms.clustering.bgmm)
MultiROI (class in nipy.labs.spatial_models.mroi)
MultiSubjectParcellation (class in nipy.labs.spatial_models.parcellation)
multivariate_stat (class in nipy.labs.group.spatial_relaxation_onesample)
MutualInformation (class in nipy.algorithms.registration.similarity_measures)

N

n() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
name (nipy.modalities.fmri.formula.Beta attribute)
(nipy.modalities.fmri.formula.FactorTerm attribute)
(nipy.modalities.fmri.formula.Term attribute)
natural_spline() (in module nipy.modalities.fmri.design)
(in module nipy.modalities.fmri.formula)
NDGridDomain (class in nipy.labs.spatial_models.discrete_domain)
ndim() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
(nipy.core.image.xyz_image.XYZImage static method)
needs_review() (in module nipy.testing.decorators)
new() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
next() (nipy.algorithms.statistics.nlsmodel.NLSModel method)
(nipy.core.image.image_list.ImageList method)
(nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
(nipy.core.image.roi.ROIall method)
(nipy.modalities.fmri.fmri.FmriImageList method)
ni_affine_pixdim_from_affine() (in module nipy.io.nifti_ref)
nipy.algorithms.clustering.bgmm (module)
nipy.algorithms.clustering.clustering (module)
nipy.algorithms.clustering.ggmixture (module)
nipy.algorithms.clustering.gmm (module)
nipy.algorithms.clustering.hierarchical_clustering (module)
nipy.algorithms.clustering.imm (module)
nipy.algorithms.clustering.von_mises_fisher_mixture (module)
nipy.algorithms.diagnostics.screens (module)
nipy.algorithms.diagnostics.timediff (module)
nipy.algorithms.diagnostics.tsdiffplot (module)
nipy.algorithms.fwhm (module)
nipy.algorithms.graph.bipartite_graph (module)
nipy.algorithms.graph.field (module)
nipy.algorithms.graph.forest (module)
nipy.algorithms.graph.graph (module)
nipy.algorithms.interpolation (module)
nipy.algorithms.kernel_smooth (module)
nipy.algorithms.optimize (module)
nipy.algorithms.registration.affine (module)
nipy.algorithms.registration.chain_transform (module)
nipy.algorithms.registration.grid_transform (module)
nipy.algorithms.registration.groupwise_registration (module)
nipy.algorithms.registration.histogram_registration (module)
nipy.algorithms.registration.resample (module)
nipy.algorithms.registration.similarity_measures (module)
nipy.algorithms.registration.spline_transform (module)
nipy.algorithms.registration.transform (module)
nipy.algorithms.resample (module)
nipy.algorithms.routines.fast_distance (module)
nipy.algorithms.segmentation.brain_segmentation (module)
nipy.algorithms.segmentation.vem (module)
nipy.algorithms.statistics.classification (module)
nipy.algorithms.statistics.empirical_pvalue (module)
nipy.algorithms.statistics.nlsmodel (module)
nipy.algorithms.statistics.onesample (module)
nipy.algorithms.statistics.regression (module)
nipy.algorithms.statistics.rft (module)
nipy.algorithms.statistics.utils (module)
nipy.core.image.affine_image (module)
nipy.core.image.generators (module)
nipy.core.image.image (module)
nipy.core.image.image_list (module)
nipy.core.image.roi (module)
nipy.core.image.xyz_image (module)
nipy.core.reference.array_coords (module)
nipy.core.reference.coordinate_map (module)
nipy.core.reference.coordinate_system (module)
nipy.core.reference.slices (module)
nipy.core.transforms.affines (module)
nipy.interfaces.matlab (module)
nipy.interfaces.spm (module)
nipy.io.files (module)
nipy.io.nifti_ref (module)
nipy.labs.datasets.converters (module)
nipy.labs.datasets.transforms.affine_transform (module)
nipy.labs.datasets.transforms.affine_utils (module)
nipy.labs.datasets.transforms.transform (module)
nipy.labs.datasets.volumes.volume_data (module)
nipy.labs.datasets.volumes.volume_field (module)
nipy.labs.datasets.volumes.volume_grid (module)
nipy.labs.datasets.volumes.volume_img (module)
nipy.labs.glm.glm (module)
nipy.labs.group.displacement_field (module)
nipy.labs.group.mixed_effects (module)
nipy.labs.group.permutation_test (module)
nipy.labs.group.spatial_relaxation_onesample (module)
nipy.labs.mask (module)
nipy.labs.spatial_models.bayesian_structural_analysis (module)
nipy.labs.spatial_models.bsa_io (module)
nipy.labs.spatial_models.discrete_domain (module)
nipy.labs.spatial_models.hierarchical_parcellation (module)
nipy.labs.spatial_models.hroi (module)
nipy.labs.spatial_models.mroi (module)
nipy.labs.spatial_models.parcel_io (module)
nipy.labs.spatial_models.parcellation (module)
nipy.labs.spatial_models.structural_bfls (module)
nipy.labs.statistical_mapping (module)
nipy.labs.utils.random_threshold (module)
nipy.labs.utils.reproducibility_measures (module)
nipy.labs.utils.simul_multisubject_fmri_dataset (module)
nipy.labs.utils.zscore (module)
nipy.labs.viz_tools.activation_maps (module)
nipy.labs.viz_tools.anat_cache (module)
nipy.labs.viz_tools.cm (module)
nipy.labs.viz_tools.coord_tools (module)
nipy.labs.viz_tools.maps_3d (module)
nipy.labs.viz_tools.ortho_slicer (module)
nipy.labs.viz_tools.test.test_coord_tools (module)
nipy.labs.viz_tools.test.test_ortho_slicer (module)
nipy.modalities.fmri.design (module)
nipy.modalities.fmri.design_matrix (module)
nipy.modalities.fmri.experimental_paradigm (module)
nipy.modalities.fmri.fmri (module)
nipy.modalities.fmri.fmristat.delay (module)
nipy.modalities.fmri.fmristat.hrf (module)
nipy.modalities.fmri.fmristat.invert (module)
nipy.modalities.fmri.fmristat.model (module)
nipy.modalities.fmri.formula (module)
nipy.modalities.fmri.hemodynamic_models (module)
nipy.modalities.fmri.hrf (module)
nipy.modalities.fmri.pca (module)
nipy.modalities.fmri.spm.correlation (module)
nipy.modalities.fmri.spm.model (module)
nipy.modalities.fmri.spm.reml (module)
nipy.modalities.fmri.spm.trace (module)
nipy.modalities.fmri.utils (module)
nipy.pkg_info (module)
nipy.testing.decorators (module)
nipy.testing.lightunit (module)
nipy.testing.nitest (module)
nipy.testing.nosepatch (module)
nipy.utils.environment (module)
nipy.utils.onetime (module)
nipy.utils.perlpie (module)
nipy.utils.tmpdirs (module)
NLSModel (class in nipy.algorithms.statistics.nlsmodel)
nonzero() (in module nipy.algorithms.registration.similarity_measures)
(in module nipy.labs.group.mixed_effects)
normal() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
normal_eval() (in module nipy.algorithms.clustering.bgmm)
NormalEmpiricalNull (class in nipy.algorithms.statistics.empirical_pvalue)
normalize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
NormalizedMutualInformation (class in nipy.algorithms.registration.similarity_measures)
npoints() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
nseries() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)

O

OLS (class in nipy.modalities.fmri.fmristat.model)
ols() (in module nipy.labs.glm.glm)
onesample_stat() (in module nipy.labs.group.permutation_test)
onesample_test() (in module nipy.labs.statistical_mapping)
OneSidedF (class in nipy.algorithms.statistics.rft)
OneTimeProperty (class in nipy.utils.onetime)
opening() (nipy.algorithms.graph.field.Field method)
optimize() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
orientation_affine() (in module nipy.core.transforms.affines)
OrientationError (class in nipy.core.transforms.affines)
orth() (in module nipy.modalities.fmri.spm.reml)
OrthoSlicer (class in nipy.labs.viz_tools.ortho_slicer)
output_AR1() (in module nipy.algorithms.statistics.regression)
(in module nipy.modalities.fmri.fmristat.model)
output_F() (in module nipy.algorithms.statistics.regression)
(in module nipy.modalities.fmri.fmristat.model)
output_resid() (in module nipy.algorithms.statistics.regression)
(in module nipy.modalities.fmri.fmristat.model)
output_T() (in module nipy.algorithms.statistics.regression)
(in module nipy.modalities.fmri.fmristat.model)
overall_loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)

P

Paradigm (class in nipy.modalities.fmri.experimental_paradigm)
param (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
(nipy.algorithms.registration.chain_transform.ChainTransform attribute)
(nipy.algorithms.registration.grid_transform.GridTransform attribute)
(nipy.algorithms.registration.grid_transform.SplineTransform attribute)
(nipy.algorithms.registration.spline_transform.SplineTransform attribute)
(nipy.algorithms.registration.transform.Transform attribute)
parameters() (nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
params (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
parcel_input() (in module nipy.labs.spatial_models.parcel_io)
parcellation_based_analysis() (in module nipy.labs.spatial_models.parcel_io)
parcels() (in module nipy.core.image.generators)
partition() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
ParzenMutualInformation (class in nipy.algorithms.registration.similarity_measures)
PCA
pca() (in module nipy.modalities.fmri.pca)
pca_image() (in module nipy.modalities.fmri.pca)
peak_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
peak_XYZ() (in module nipy.labs.group.permutation_test)
perl_dash_pie() (in module nipy.utils.perlpie)
perm_prfx() (in module nipy.labs.spatial_models.hierarchical_parcellation)
permutation_test (class in nipy.labs.group.permutation_test)
permutation_test_onesample (class in nipy.labs.group.permutation_test)
permutation_test_onesample_graph (class in nipy.labs.group.permutation_test)
permutation_test_twosample (class in nipy.labs.group.permutation_test)
PET
pkg_commit_hash() (in module nipy.pkg_info)
plot() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
plot2() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
plot2D() (in module nipy.algorithms.clustering.gmm)
plot_anat() (in module nipy.labs.viz_tools.activation_maps)
plot_anat_3d() (in module nipy.labs.viz_tools.maps_3d), [1]
plot_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
plot_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
plot_map() (in module nipy.labs.viz_tools.activation_maps), [1]
(nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
plot_map_3d() (in module nipy.labs.viz_tools.maps_3d), [1]
plot_tsdiffs() (in module nipy.algorithms.diagnostics.tsdiffplot)
plot_tsdiffs_image() (in module nipy.algorithms.diagnostics.tsdiffplot)
plugin() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
pool() (nipy.core.image.roi.CoordinateMapROI method)
(nipy.core.image.roi.DiscreteROI method)
(nipy.core.image.roi.ROIall method)
pop (nipy.core.image.roi.ROISequence attribute)
pop() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
population() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
posterior() (nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
pre_rotation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
precond (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
preconditioner() (in module nipy.algorithms.registration.affine)
predict() (nipy.algorithms.statistics.classification.Classifier method)
(nipy.algorithms.statistics.nlsmodel.NLSModel method)
prepare_arrays() (in module nipy.labs.statistical_mapping)
prevalence_density() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
print_() (in module nipy.algorithms.segmentation.vem)
print_extended_help() (in module nipy.utils.perlpie)
probability_under_prior() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
product() (in module nipy.core.reference.coordinate_map)
(in module nipy.core.reference.coordinate_system)
propagate_upward() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
propagate_upward_and() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
pth_from_pvals() (nipy.algorithms.statistics.empirical_pvalue.FDR method)
pvalue() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.labs.glm.glm.contrast method)
(nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)

Q

Q() (in module nipy.algorithms.statistics.rft)
quasi() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)

R

RandomEffects (class in nipy.modalities.fmri.formula)
randthresh() (in module nipy.labs.utils.random_threshold)
randthresh_connex() (in module nipy.labs.utils.random_threshold)
randthresh_fixwind_gaussnull() (in module nipy.labs.utils.random_threshold)
randthresh_fixwind_gaussnull_connex() (in module nipy.labs.utils.random_threshold)
randthresh_fixwind_knownull() (in module nipy.labs.utils.random_threshold)
randthresh_fixwind_knownull_connex() (in module nipy.labs.utils.random_threshold)
randthresh_main() (in module nipy.labs.utils.random_threshold)
randthresh_varwind_gaussnull() (in module nipy.labs.utils.random_threshold)
randthresh_varwind_gaussnull_connex() (in module nipy.labs.utils.random_threshold)
randthresh_varwind_knownull() (in module nipy.labs.utils.random_threshold)
randthresh_varwind_knownull_connex() (in module nipy.labs.utils.random_threshold)
rank() (in module nipy.modalities.fmri.formula)
Realign4d (class in nipy.algorithms.registration.groupwise_registration)
realign4d() (in module nipy.algorithms.registration.groupwise_registration)
Realign4dAlgorithm (class in nipy.algorithms.registration.groupwise_registration)
reduce() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
reduce_coo_matrix() (in module nipy.labs.spatial_models.discrete_domain)
reduce_to_leaves() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
reference (nipy.core.image.xyz_image.XYZImage attribute)
reference() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
RegressionOutput (class in nipy.algorithms.statistics.regression)
RegressionOutputList (class in nipy.algorithms.statistics.regression)
reml() (in module nipy.modalities.fmri.spm.reml)
remove (nipy.core.image.roi.ROISequence attribute)
remove_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
remove_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
remove_trivial_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
removeO() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
renamed_axes() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
renamed_domain() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
renamed_range() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
renamed_reference() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
reorder_from_leaves_to_roots() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
reordered_axes() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
reordered_domain() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
reordered_range() (in module nipy.core.reference.coordinate_map)
(nipy.core.image.xyz_image.XYZTransform method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
reordered_reference() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.image.Image method)
(nipy.core.image.xyz_image.XYZImage method)
replace_inside() (in module nipy.labs.viz_tools.cm)
representative_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
resample() (in module nipy.algorithms.registration.resample)
(in module nipy.algorithms.resample)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
resample4d() (in module nipy.algorithms.registration.groupwise_registration)
resample_full_data() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
resample_img2img() (in module nipy.algorithms.resample)
resample_regressor() (in module nipy.modalities.fmri.hemodynamic_models)
resampled_to_affine() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
resampled_to_img() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
resel2fwhm() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
ReselImage (class in nipy.algorithms.fwhm)
Resels (class in nipy.algorithms.fwhm)
responsibilities() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
results_generator() (in module nipy.modalities.fmri.fmristat.model)
reverse (nipy.core.image.roi.ROISequence attribute)
rewrite() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
right_incidence() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
Rigid (class in nipy.algorithms.registration.affine)
Rigid2D (class in nipy.algorithms.registration.affine)
ROI (class in nipy.core.image.roi)
roi_confidence() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
roi_ellipse_fn() (in module nipy.core.image.roi)
roi_from_array_sampling_coordmap() (in module nipy.core.image.roi)
roi_prevalence() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
roi_sphere_fn() (in module nipy.core.image.roi)
ROIall (class in nipy.core.image.roi)
ROISequence (class in nipy.core.image.roi)
rollaxis() (in module nipy.core.image.image)
rotation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
rotation_mat2vec() (in module nipy.algorithms.registration.affine)
rotation_vec2mat() (in module nipy.algorithms.registration.affine)
Roy (class in nipy.algorithms.statistics.rft)
run() (nipy.algorithms.segmentation.vem.VEM method)
run_jobdef() (in module nipy.interfaces.spm)
run_matlab() (in module nipy.interfaces.matlab)
run_matlab_script() (in module nipy.interfaces.matlab)

S

safe_dtype() (in module nipy.core.reference.coordinate_system)
sample() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.labs.group.displacement_field.displacement_field method)
(nipy.labs.group.displacement_field.gaussian_random_field method)
sample_all_blocks() (nipy.labs.group.displacement_field.displacement_field method)
sample_and_average() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
sample_condition() (in module nipy.modalities.fmri.hemodynamic_models)
sample_indicator() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
sample_log_conditional_posterior() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
save() (in module nipy.io.files)
(in module nipy.labs.datasets.converters)
(nipy.labs.glm.glm.glm method)
(nipy.modalities.fmri.fmristat.model.ModelOutputImage method)
scale_space() (in module nipy.algorithms.statistics.rft)
scaling (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
scanner_coords() (in module nipy.algorithms.registration.groupwise_registration)
scanner_time() (nipy.algorithms.registration.groupwise_registration.Image4d method)
scans_for_fname() (in module nipy.interfaces.spm)
scans_for_fnames() (in module nipy.interfaces.spm)
screen() (in module nipy.algorithms.diagnostics.screens)
SecondStage (class in nipy.modalities.fmri.spm.model)
select() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.MultiROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
select_vmm() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
select_vmm_cv() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
series() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
series_from_mask() (in module nipy.labs.mask)
set() (nipy.algorithms.clustering.gmm.GridDescriptor method)
set_constant_densities() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
set_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
set_euclidian() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
set_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
set_field() (nipy.algorithms.graph.field.Field method)
set_fmin() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
set_gaussian() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
set_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
set_individual_labels() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
set_priors() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
set_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.MultiROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
set_template_labels() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
set_transform() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
set_vector12() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
set_weights() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
setattr_on_read() (in module nipy.utils.onetime)
shape (nipy.algorithms.registration.grid_transform.GridTransform attribute)
(nipy.algorithms.registration.grid_transform.SplineTransform attribute)
shape() (nipy.core.image.affine_image.AffineImage static method)
(nipy.core.image.image.Image static method)
(nipy.core.image.xyz_image.XYZImage static method)
shape_generator() (in module nipy.core.image.generators)
shifted_domain_origin() (in module nipy.core.reference.coordinate_map)
shifted_range_origin() (in module nipy.core.reference.coordinate_map)
show() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
(nipy.modalities.fmri.design_matrix.DesignMatrix method)
show_components() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
sigma2fwhm() (in module nipy.algorithms.kernel_smooth)
signal_to_pproba() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
Similarity (class in nipy.algorithms.registration.affine)
similarity (nipy.algorithms.registration.histogram_registration.HistogramRegistration attribute)
Similarity2D (class in nipy.algorithms.registration.affine)
SimilarityMeasure (class in nipy.algorithms.registration.similarity_measures)
simple_update() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
simulated_pvalue() (in module nipy.labs.statistical_mapping)
single_run_realign4d() (in module nipy.algorithms.registration.groupwise_registration)
slice_generator() (in module nipy.core.image.generators)
slice_parcels() (in module nipy.core.image.generators)
SliceMaker (class in nipy.core.image.image)
smatrix_from_3d_array() (in module nipy.labs.spatial_models.discrete_domain)
smatrix_from_3d_idx() (in module nipy.labs.spatial_models.discrete_domain)
smatrix_from_nd_array() (in module nipy.labs.spatial_models.discrete_domain)
smatrix_from_nd_idx() (in module nipy.labs.spatial_models.discrete_domain)
smooth() (nipy.algorithms.kernel_smooth.LinearFilter method)
smoothed_histogram_from_samples() (in module nipy.algorithms.statistics.empirical_pvalue)
solve4linearsymbol() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Term method)
sort (nipy.core.image.roi.ROISequence attribute)
sort_labels() (nipy.algorithms.segmentation.vem.VEM method)
sorted_values() (in module nipy.labs.group.permutation_test)
spatial_coordmap (nipy.core.image.affine_image.AffineImage attribute)
spectral_decomposition() (in module nipy.modalities.fmri.fmristat.hrf)
sphere_density() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
spherical_search() (in module nipy.algorithms.statistics.rft)
SplineTransform (class in nipy.algorithms.registration.grid_transform)
(class in nipy.algorithms.registration.spline_transform)
split() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
split_affine() (in module nipy.algorithms.registration.groupwise_registration)
split_group() (in module nipy.labs.utils.reproducibility_measures)
SPM
SPM approach
SPM software
spm_dispersion_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
spm_hrf() (in module nipy.modalities.fmri.hemodynamic_models)
spm_path() (nipy.interfaces.spm.SpmInfo static method)
spm_time_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
SpmInfo (class in nipy.interfaces.spm)
square_gaussian_filter() (in module nipy.labs.group.displacement_field)
square_gaussian_filter1d() (in module nipy.labs.group.displacement_field)
SSE() (nipy.algorithms.statistics.nlsmodel.NLSModel method)
stack2designs() (in module nipy.modalities.fmri.design)
stack_contrasts() (in module nipy.modalities.fmri.design)
stack_designs() (in module nipy.modalities.fmri.design)
stat() (nipy.labs.glm.glm.contrast method)
statistics_from_position() (in module nipy.labs.utils.reproducibility_measures)
step_function() (in module nipy.modalities.fmri.utils)
stratify() (nipy.modalities.fmri.formula.Factor method)
StructuredDomain (class in nipy.labs.spatial_models.discrete_domain)
subdomain_from_array() (in module nipy.labs.spatial_models.mroi)
subdomain_from_balls() (in module nipy.labs.spatial_models.mroi)
subdomain_from_image() (in module nipy.labs.spatial_models.mroi)
subdomain_from_position_and_image() (in module nipy.labs.spatial_models.mroi)
SubDomains (class in nipy.labs.spatial_models.mroi)
subfield() (nipy.algorithms.graph.field.Field method)
subforest() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
subgraph() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
subgraph_left() (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
subgraph_right() (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
subgrid_affine() (in module nipy.algorithms.registration.affine)
subs() (nipy.modalities.fmri.formula.Beta method)
(nipy.modalities.fmri.formula.Factor method)
(nipy.modalities.fmri.formula.FactorTerm method)
(nipy.modalities.fmri.formula.Formula method)
(nipy.modalities.fmri.formula.RandomEffects method)
(nipy.modalities.fmri.formula.Term method)
subsample() (in module nipy.core.image.image)
(nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
summary() (nipy.labs.glm.glm.contrast method)
SupervisedLikelihoodRatio (class in nipy.algorithms.registration.similarity_measures)
surrogate_3d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset)
surrogate_4d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset)
symmeterize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
synchronized_order() (in module nipy.core.image.image)

T

taylor_approx() (in module nipy.modalities.fmri.fmristat.hrf)
TemporaryDirectory (class in nipy.utils.tmpdirs)
Term (class in nipy.modalities.fmri.formula)
terms (nipy.modalities.fmri.formula.Factor attribute)
(nipy.modalities.fmri.formula.Formula attribute)
(nipy.modalities.fmri.formula.RandomEffects attribute)
terms() (in module nipy.modalities.fmri.formula)
test() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
test_coord_transform_trivial() (in module nipy.labs.viz_tools.test.test_coord_tools)
test_EC2() (in module nipy.algorithms.statistics.utils)
test_EC3() (in module nipy.algorithms.statistics.utils)
test_edge_detect() (in module nipy.labs.viz_tools.test.test_ortho_slicer)
test_fast_abs_percentile() (in module nipy.labs.viz_tools.test.test_ortho_slicer)
test_find_cut_coords() (in module nipy.labs.viz_tools.test.test_coord_tools)
test_stat() (in module nipy.labs.utils.random_threshold)
three_classes_GMM_fit() (in module nipy.algorithms.statistics.empirical_pvalue)
threshold() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
threshold_bifurcations() (nipy.algorithms.graph.field.Field method)
threshold_connect_components() (in module nipy.labs.mask)
time_slice_diffs() (in module nipy.algorithms.diagnostics.timediff)
title() (nipy.labs.viz_tools.ortho_slicer.OrthoSlicer method)
to_coo_matrix() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
to_image() (nipy.core.image.xyz_image.XYZImage method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
to_matrix_vector() (in module nipy.core.transforms.affines)
(in module nipy.labs.datasets.transforms.affine_utils)
tocoordmap() (nipy.core.image.roi.ContinuousROI method)
todiscrete() (nipy.core.image.roi.ContinuousROI method)
topology() (nipy.labs.spatial_models.discrete_domain.MeshDomain method)
TOutput (class in nipy.algorithms.statistics.regression)
train() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
Transform (class in nipy.algorithms.registration.transform)
(class in nipy.labs.datasets.transforms.transform)
translation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
transposed_values (nipy.core.reference.array_coords.ArrayCoordMap attribute)
tree_depth() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
trRV() (in module nipy.modalities.fmri.spm.trace)
TStat (class in nipy.algorithms.statistics.rft)
ttest() (in module nipy.labs.utils.reproducibility_measures)
twosample_stat() (in module nipy.labs.group.permutation_test)
twosample_test() (in module nipy.labs.statistical_mapping)

U

uncorrected_threshold() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
unweighted_likelihood() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
unweighted_likelihood_() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update_block() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_block_SA() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_displacements() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_displacements_SA() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_effects() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_labels() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_mean_effect() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_means() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update_parameters_mcmc() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_parameters_saem() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_precisions() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update_summary_statistics() (nipy.labs.group.spatial_relaxation_onesample.multivariate_stat method)
update_weights() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)

V

values (nipy.core.reference.array_coords.ArrayCoordMap attribute)
values_in_world() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
VBGMM (class in nipy.algorithms.clustering.bgmm)
ve_step() (nipy.algorithms.segmentation.vem.VEM method)
VEM (class in nipy.algorithms.segmentation.vem)
vm_step() (nipy.algorithms.segmentation.vem.VEM method)
vm_step_gauss() (in module nipy.algorithms.segmentation.vem)
vm_step_laplace() (in module nipy.algorithms.segmentation.vem)
volume2ball() (in module nipy.algorithms.statistics.rft)
VolumeData (class in nipy.labs.datasets.volumes.volume_data)
VolumeField (class in nipy.labs.datasets.volumes.volume_field)
VolumeGrid (class in nipy.labs.datasets.volumes.volume_grid)
VolumeImg (class in nipy.labs.datasets.volumes.volume_img)
VonMisesMixture (class in nipy.algorithms.clustering.von_mises_fisher_mixture)
voronoi() (in module nipy.algorithms.clustering.clustering)
voronoi_diagram() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
voronoi_labelling() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
VoxBo
voxel
voxel_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
voxel_thresholded_ttest() (in module nipy.labs.utils.reproducibility_measures)

W

ward() (in module nipy.algorithms.clustering.hierarchical_clustering)
(nipy.algorithms.graph.field.Field method)
ward_field_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
ward_quick() (in module nipy.algorithms.clustering.hierarchical_clustering)
ward_quick_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
ward_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
water activation PET
weighted_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
weighted_feature_density() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
weighted_median() (in module nipy.algorithms.segmentation.vem)
WeightedForest (class in nipy.algorithms.clustering.hierarchical_clustering)
WeightedGraph (class in nipy.algorithms.graph.graph)
wgraph_from_3d_grid() (in module nipy.algorithms.graph.graph)
wgraph_from_adjacency() (in module nipy.algorithms.graph.graph)
wgraph_from_coo_matrix() (in module nipy.algorithms.graph.graph)
wishart_eval() (in module nipy.algorithms.clustering.bgmm)
write_csv() (nipy.modalities.fmri.design_matrix.DesignMatrix method)
write_data() (in module nipy.core.image.generators)
write_parcellation_images() (in module nipy.labs.spatial_models.parcel_io)
write_screen_res() (in module nipy.algorithms.diagnostics.screens)
write_to_csv() (nipy.modalities.fmri.experimental_paradigm.BlockParadigm method)
(nipy.modalities.fmri.experimental_paradigm.EventRelatedParadigm method)
(nipy.modalities.fmri.experimental_paradigm.Paradigm method)

X

xslice() (in module nipy.core.reference.slices)
xyz_ordered() (nipy.core.image.affine_image.AffineImage method)
(nipy.core.image.xyz_image.XYZImage method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
xyz_transform (nipy.core.image.xyz_image.XYZImage attribute)
XYZImage (class in nipy.core.image.xyz_image)
XYZTransform (class in nipy.core.image.xyz_image)

Y

yslice() (in module nipy.core.reference.slices)

Z

z_to_slice() (nipy.algorithms.registration.groupwise_registration.Image4d method)
zscore() (in module nipy.labs.utils.zscore)
(nipy.labs.glm.glm.contrast method)
(nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
zslice() (in module nipy.core.reference.slices)