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0.11.00.11.0
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Index

_ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z

_

__init__() (nipype.caching.memory.Memory method)
(nipype.caching.memory.PipeFunc method), [1]
(nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.Interface method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.NipypeInterfaceError method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.Stream method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabCommand method)
(nipype.interfaces.matlab.MatlabInputSpec method)
(nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
(nipype.pipeline.engine.Workflow method)
(nipype.pipeline.engine.WorkflowBase method)

A

ACPCTransform
add_class_trait() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
add_nodes() (nipype.pipeline.engine.Workflow method)
add_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
add_trait_category() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
add_trait_listener() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
AddCSVColumn
AddCSVRow
AddNoise
AddScalarVolumes
AffineRegistration
aggregate_outputs() (nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.Interface method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
all_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Allineate
always_run (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
Analyze2nii
AnalyzeHeader
AnalyzeWarp
antsCorticalThickness
antsIntroduction
ApplyDeformations
ApplyInverseDeformation
ApplyMask, [1]
ApplyTOPUP
ApplyTransform
ApplyTransforms
ApplyTransformsToPoints
ApplyVolTransform
ApplyWarp, [1]
ApplyXfm
arg_error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
args (nipype.interfaces.base.NipypeInterfaceError attribute)
ArtifactDetect
as_ctrait() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
AssertEqual
Atropos
Autobox
Automask
AutoTcorrelate
AverageAffineTransform
AverageImages
AverageNetworks
AvScale

B

Bandpass
base_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
BaseInterface (class in nipype.interfaces.base)
BaseInterfaceInputSpec (class in nipype.interfaces.base)
BaseTraitedSpec (class in nipype.interfaces.base)
BBRegister
BEDPOSTX
BEDPOSTX4
BEDPOSTX5
BET
Binarize
BinaryMaskEditorBasedOnLandmarks
BinaryMaths
BlurInMask
BrainMask
BRAINSABC
BRAINSAlignMSP
BRAINSClipInferior
BRAINSConstellationDetector
BRAINSConstellationModeler
BRAINSCreateLabelMapFromProbabilityMaps
BRAINSCut
BRAINSDemonWarp, [1]
BRAINSEyeDetector
BRAINSFit, [1]
BRAINSInitializedControlPoints
BRAINSLandmarkInitializer
BRAINSLinearModelerEPCA
BRAINSLmkTransform
BRAINSMultiSTAPLE
BRAINSMush
BRAINSPosteriorToContinuousClass
BRAINSResample, [1]
BRAINSResize
BRAINSROIAuto, [1]
BRAINSSnapShotWriter
BRAINSTalairach
BRAINSTalairachMask
BRAINSTransformConvert
BRAINSTransformFromFiducials
BRAINSTrimForegroundInDirection
BrickStat
BSplineDeformableRegistration
BSplineToDeformationField
BuildConnectome
buildtemplateparallel
Bunch (class in nipype.interfaces.base)

C

C3dAffineTool
cache() (nipype.caching.Memory method)
(nipype.caching.memory.Memory method)
Calc
CalcCoregAffine
CalculateNormalizedMoments
Camino2Trackvis
can_resume (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
CannyEdge
CannySegmentationLevelSetImageFilter
CastScalarVolume
CFFConverter
ChangeDataType
CheckerBoardFilter
class_default_traits_view() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
class_editable_traits() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
class_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
class_trait_view() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
class_trait_view_elements() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
class_traits() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
CleanUpOverlapLabels
clear_previous_runs() (nipype.caching.Memory method)
(nipype.caching.memory.Memory method)
clear_runs_since() (nipype.caching.Memory method)
(nipype.caching.memory.Memory method)
clone() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
(nipype.pipeline.engine.Workflow method)
(nipype.pipeline.engine.WorkflowBase method)
clone_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Cluster
cmd (nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
cmdline (nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
CoherenceAnalyzer
CommandLine (class in nipype.interfaces.base)
CommandLineInputSpec (class in nipype.interfaces.base)
compareTractInclusion
Complex
ComputeEigensystem
ComputeFractionalAnisotropy
ComputeMask
ComputeMeanDiffusivity
ComputeMeshWarp
ComputeTDI
ComputeTensorTrace
Concatenate
configure_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Conmat
connect() (nipype.pipeline.engine.Workflow method)
ConstrainedSphericalDeconvolution
ContrastMgr
ConvertScalarImageToRGB
ConvertWarp
ConvertXFM
Copy
copy_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
copyable_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
CopyGeom
CopyMeta
Coregister
create_editor() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
CreateMatrix
CreateNifti
CreateNodes
CreateTiledMosaic
CreateWarped
CSVReader
CurvatureAnisotropicDiffusion

D

DARTEL
DARTELNorm2MNI
DataFinder
DataGrabber
DataSink
Dcm2nii
DcmStack
default_traits_view() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
default_value (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
default_value_type (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
Denoise
Despike
Detrend
DICOMConvert
DicomImport
DicomToNrrdConverter
dictcopy() (nipype.interfaces.base.Bunch method)
DiffusionTensorScalarMeasurements
DiffusionTensorStreamlineTrack
DiffusionWeightedVolumeMasking
DilateImage, [1]
DilateMask
Directions2Amplitude
disconnect() (nipype.pipeline.engine.Workflow method)
Distance, [1]
DistanceMap
DistanceMaps
DT2NIfTI
DTI
dtiaverage
dtiestim
DTIexport
DTIFit, [1]
DTIimport
dtiprocess
DTIRecon
DTITracker
DTLUTGen
DTMetric
DumpBinaryTrainingVectors
dup_arg_error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
DWI2SphericalHarmonicsImage
DWI2Tensor
DWICompare
DWIConvert
DWIJointRicianLMMSEFilter
DWIRicianLMMSEFilter
DWISimpleCompare
DWIToDTIEstimation
DWIUnbiasedNonLocalMeansFilter
DynamicTraitedSpec (class in nipype.interfaces.base)

E

Eddy
EddyCorrect
edit_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
editable_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
editor (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
EditTransform
EMSegmentCommandLine
EMSegmentTransformToNewFormat
EPIDeWarp
EpiReg
Erode
ErodeImage, [1]
error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
ErrorMap
ESLR
EstimateContrast, [1]
EstimateFOD
EstimateModel
EstimateResponseForSH
Eval
ExpertAutomatedRegistration
export() (nipype.pipeline.engine.Workflow method)
ExtractMainComponent
extractNrrdVectorIndex
ExtractROI
ExtractSkeleton

F

FactorialDesign
FAST
fcsv_to_hdf5
FEAT
FEATModel
FEATRegister
fiberprocess
fiberstats
fibertrack
FiducialRegistration
fileno() (nipype.interfaces.base.Stream method)
FILMGLS
FilterRegressor
FilterTracks
Fim
FindCenterOfBrain
FindShPeaks
FindTheBiggest
FIRST
FitGLM
FitMSParams
FitTensor
FLAMEO
FlippedDifference
FLIRT
FmriRealign4d
FNIRT
format_node() (in module nipype.pipeline.engine)
Fourier
FreeSurferSource
FUGUE
full_info() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
fullname (nipype.pipeline.engine.JoinNode attribute)
(nipype.pipeline.engine.MapNode attribute)
(nipype.pipeline.engine.Node attribute)
(nipype.pipeline.engine.Workflow attribute)
(nipype.pipeline.engine.WorkflowBase attribute)
Function
FuzzyOverlap, [1]

G

GaussianBlurImageFilter
Generate5tt
GenerateBrainClippedImage
GenerateCsfClippedFromClassifiedImage
GenerateDirections
GenerateLabelMapFromProbabilityMap
GenerateSummedGradientImage
GenerateTestImage
GenerateWhiteMatterMask
GenWarpFields
get() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
get_default_value() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
get_dependencies() (in module nipype.interfaces.base)
get_editor() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
get_hashval() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
get_matlab_command() (in module nipype.interfaces.matlab)
get_node() (nipype.pipeline.engine.Workflow method)
get_output() (nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
get_subnodes() (nipype.pipeline.engine.MapNode method)
get_traitsfree() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
get_value() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
GLM
GLMFit
GradientAnisotropicDiffusion
GradientAnisotropicDiffusionImageFilter
GrayscaleFillHoleImageFilter
GrayscaleGrindPeakImageFilter
GrayscaleModelMaker
GroupAndStack
gtractAnisotropyMap
gtractAverageBvalues
gtractClipAnisotropy
gtractConcatDwi
gtractCopyImageOrientation
gtractCoRegAnatomy
gtractCoregBvalues
gtractCostFastMarching
gtractCreateGuideFiber
gtractFastMarchingTracking
gtractFiberTracking
gtractImageConformity
gtractInvertBSplineTransform
gtractInvertDisplacementField
gtractInvertRigidTransform
gtractResampleAnisotropy
gtractResampleB0
gtractResampleCodeImage
gtractResampleDWIInPlace
gtractResampleFibers
gtractTensor
gtractTransformToDisplacementField
Gunzip

H

HammerAttributeCreator
HARDIMat
has_items (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
has_traits_interface() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
hash_exists() (nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
help() (nipype.interfaces.base.BaseInterface class method)
(nipype.interfaces.base.CommandLine class method)
(nipype.interfaces.base.Interface class method)
(nipype.interfaces.base.MpiCommandLine class method)
(nipype.interfaces.base.SEMLikeCommandLine class method)
(nipype.interfaces.base.StdOutCommandLine class method)
(nipype.interfaces.matlab.MatlabCommand class method)
(nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
HistogramMatching
HistogramMatchingFilter

I

ICC
IdentityInterface
Image2Voxel
ImageLabelCombine
ImageMaths
ImageMeants
ImageRegionPlotter
ImageStats, [1]
info() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
info_text (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
info_trait (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
init() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
inner_traits() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
input_spec (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
InputMultiPath (class in nipype.interfaces.base)
inputs (nipype.pipeline.engine.JoinNode attribute)
(nipype.pipeline.engine.MapNode attribute)
(nipype.pipeline.engine.Node attribute)
(nipype.pipeline.engine.Workflow attribute)
(nipype.pipeline.engine.WorkflowBase attribute)
insertMidACPCpoint
IntensityDifferenceMetric
interface
Interface (class in nipype.interfaces.base)
interface (nipype.pipeline.engine.JoinNode attribute)
(nipype.pipeline.engine.MapNode attribute)
(nipype.pipeline.engine.Node attribute)
InterfaceResult (class in nipype.interfaces.base)
InvWarp
IOBase
is_mapped (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
is_valid() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
IsotropicSmooth
items() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
items_event() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
iteritems() (nipype.interfaces.base.Bunch method)

J

JacobianDeterminant
JistBrainMgdmSegmentation
JistBrainMp2rageDuraEstimation
JistBrainMp2rageSkullStripping
JistBrainPartialVolumeFilter
JistCortexSurfaceMeshInflation
JistIntensityMp2rageMasking
JistLaminarProfileCalculator
JistLaminarProfileGeometry
JistLaminarProfileSampling
JistLaminarROIAveraging
JistLaminarVolumetricLayering
joinfield (nipype.pipeline.engine.JoinNode attribute)
JoinNode (class in nipype.pipeline.engine)
joinsource (nipype.pipeline.engine.JoinNode attribute)
JointFusion
JointHistogram
JSONFileGrabber
JSONFileSink

K

keyword_error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)

L

L2Model
Label2Vol
LabelConfig
LabelMapSmoothing
landmarksConstellationAligner
landmarksConstellationWeights
LaplacianThickness
Level1Design, [1]
LinearRegistration
LinRecon
list_node_names() (nipype.pipeline.engine.Workflow method)
load() (nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
(nipype.pipeline.engine.Workflow method)
(nipype.pipeline.engine.WorkflowBase method)
load_template() (in module nipype.interfaces.base)
LookupMeta

M

MakeAverageSubject
MakeDyadicVectors
MapNode (class in nipype.pipeline.engine)
Maskave
MaskScalarVolume
MathsCommand
Matlab2CSV
MatlabCommand (class in nipype.interfaces.matlab)
MatlabInputSpec (class in nipype.interfaces.matlab)
maxcurvature
MaxImage
MCFLIRT
MeanImage
Means
MedianFilter3D
MedianImageFilter
MedicAlgorithmImageCalculator
MedicAlgorithmLesionToads
MedicAlgorithmMipavReorient
MedicAlgorithmN3
MedicAlgorithmSPECTRE2010
MedicAlgorithmThresholdToBinaryMask
MELODIC
Memory (class in nipype.caching)
(class in nipype.caching.memory)
Merge, [1], [2]
MergeCNetworks
MergeCSVFiles
MergeModels
MergeNifti
MergeROIs
MESD
Mesh2PVE
MeshFix
MeshWarpMaths
message (nipype.interfaces.base.NipypeInterfaceError attribute)
metadata (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
missing_arg_error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
ModelFit
ModelMaker
ModelToLabelMap
ModifyAffine
modules
MotionOutliers
MpiCommandLine (class in nipype.interfaces.base)
MpiCommandLineInputSpec (class in nipype.interfaces.base)
MRConvert
MRIConvert
MRIMarchingCubes
MRIPretess
MRIsConvert
MRISPreproc
MRITessellate
MRMultiply
MRTransform
MRTrix2TrackVis
MRTrix3Base
MRTrixViewer
MS_LDA
MultiImageMaths
MultiPath (class in nipype.interfaces.base)
MultipleRegressDesign
MultipleRegressionDesign
MultiplyImages
MultiplyScalarVolumes
MultiResolutionAffineRegistration
MySQLSink

N

N4BiasFieldCorrection
N4ITKBiasFieldCorrection
NeighborhoodMean
NeighborhoodMedian
NetworkBasedStatistic
NetworkXMetrics
NewSegment
NIfTIDT2Camino
NiftiGeneratorBase
nipype.algorithms.icc (module)
nipype.algorithms.misc (module)
nipype.algorithms.modelgen (module)
nipype.caching.memory (module)
nipype.interfaces.base (module)
nipype.interfaces.cmtk.cmtk (module)
nipype.interfaces.cmtk.nbs (module)
nipype.interfaces.cmtk.nx (module)
nipype.interfaces.cmtk.parcellation (module)
nipype.interfaces.dcmstack (module)
nipype.interfaces.dipy.preprocess (module)
nipype.interfaces.dipy.tensors (module)
nipype.interfaces.io (module)
nipype.interfaces.matlab (module)
nipype.interfaces.mrtrix.convert (module)
nipype.interfaces.mrtrix.tensors (module)
nipype.pipeline.engine (module)
nipype.pkg_info (module)
nipype.workflows.data (module)
nipype.workflows.dmri.camino.connectivity_mapping (module)
nipype.workflows.dmri.camino.diffusion (module)
nipype.workflows.dmri.camino.group_connectivity (module)
nipype.workflows.dmri.connectivity.group_connectivity (module)
nipype.workflows.dmri.connectivity.nx (module)
nipype.workflows.dmri.dipy.denoise (module)
nipype.workflows.dmri.fsl.artifacts (module)
nipype.workflows.dmri.fsl.dti (module)
nipype.workflows.dmri.fsl.epi (module)
nipype.workflows.dmri.fsl.tbss (module)
nipype.workflows.dmri.fsl.utils (module)
nipype.workflows.dmri.mrtrix.connectivity_mapping (module)
nipype.workflows.dmri.mrtrix.diffusion (module)
nipype.workflows.dmri.mrtrix.group_connectivity (module)
nipype.workflows.fmri.fsl.estimate (module)
nipype.workflows.fmri.fsl.preprocess (module)
nipype.workflows.fmri.spm.preprocess (module)
nipype.workflows.misc.utils (module)
nipype.workflows.rsfmri.fsl.resting (module)
nipype.workflows.smri.ants.ANTSBuildTemplate (module)
nipype.workflows.smri.ants.antsRegistrationBuildTemplate (module)
nipype.workflows.smri.freesurfer.bem (module)
nipype.workflows.smri.freesurfer.recon (module)
nipype.workflows.smri.freesurfer.utils (module)
NipypeInterfaceError (class in nipype.interfaces.base)
node
Node (class in nipype.pipeline.engine)
Normalize
Normalize12
NormalizeProbabilityMapSet
num_subnodes() (nipype.pipeline.engine.MapNode method)

O

ODFRecon
ODFTracker
on_trait_change() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
on_trait_event() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
OneSampleTTest
OneSampleTTestDesign
OrientScalarVolume
OtsuThresholdImageFilter
OtsuThresholdSegmentation
output_dir() (nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
output_spec (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
OutputMultiPath (class in nipype.interfaces.base)
outputs (nipype.pipeline.engine.JoinNode attribute)
(nipype.pipeline.engine.MapNode attribute)
(nipype.pipeline.engine.Node attribute)
(nipype.pipeline.engine.Workflow attribute)
(nipype.pipeline.engine.WorkflowBase attribute)
Overlap, [1]
Overlay

P

P2PDistance
PairedTTestDesign
Parcellate
ParseDICOMDir
PETStandardUptakeValueComputation
PickAtlas
PicoPDFs
PipeFunc (class in nipype.caching.memory), [1]
pipeline
PlotMotionParams
PlotTimeSeries
PointsWarp
PowerSpectrum
PRELUDE
PrepareFieldmap
print_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
ProbabilisticSphericallyDeconvolutedStreamlineTrack
ProbeVolumeWithModel
ProbTrackX
ProbTrackX2
ProcStreamlines
ProjThresh

Q

QBallMX

R

raise_exception() (nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
Randomise
RandomVol
read() (nipype.interfaces.base.Stream method)
read_log() (in module nipype.caching.memory)
Realign
ReconAll
Refit
Registration, [1]
remove_nodes() (nipype.pipeline.engine.Workflow method)
remove_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
remove_trait_listener() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Rename
Reorient2Std
repr() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
Resample, [1], [2]
ResampleDTIVolume
ResampleScalarVectorDWIVolume
ResampleScalarVolume
reset_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Reslice
ResliceToReference
ResponseSD
result (nipype.pipeline.engine.JoinNode attribute)
(nipype.pipeline.engine.MapNode attribute)
(nipype.pipeline.engine.Node attribute)
Retroicor
return_error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
RigidRegistration
rm_all_but() (in module nipype.caching.memory)
RobustFOV
RobustRegister
RobustStatisticsSegmenter
ROIGen
ROIStats
run() (nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.Interface method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
(nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
(nipype.pipeline.engine.Workflow method)
run_command() (in module nipype.interfaces.base)

S

SampleToSurface
save() (nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
(nipype.pipeline.engine.Workflow method)
(nipype.pipeline.engine.WorkflowBase method)
scalartransform
Segment
SegStats
Select
SelectFiles
SEMLikeCommandLine (class in nipype.interfaces.base)
set() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
set_default_matlab_cmd() (nipype.interfaces.matlab.MatlabCommand class method)
set_default_mfile() (nipype.interfaces.matlab.MatlabCommand class method)
set_default_paths() (nipype.interfaces.matlab.MatlabCommand class method)
set_default_terminal_output() (nipype.interfaces.base.CommandLine class method)
(nipype.interfaces.base.MpiCommandLine class method)
(nipype.interfaces.base.SEMLikeCommandLine class method)
(nipype.interfaces.base.StdOutCommandLine class method)
(nipype.interfaces.matlab.MatlabCommand class method)
set_input() (nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)
set_trait_dispatch_handler() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
set_value() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
SFLUTGen
SFPeaks
SFPICOCalibData
Shredder
ShuffleVectorsModule
SigLoss, [1]
Similarity, [1]
SimilarityIndex
SimpleRegionGrowingSegmentation
SimpleThreshold
SimulateMultiTensor
SkullStrip
Slicer
SlicerCommandLine, [1]
SliceTimer
SliceTiming
SMM
Smooth, [1], [2]
SmoothEstimate
SmoothTessellation
SpaceTimeRealigner
SpatialFilter
SpecifyModel
SpecifySparseModel
SpecifySPMModel
SphericallyDeconvolutedStreamlineTrack
SplineFilter
Split, [1]
SplitNifti
SplitROIs
SQLiteSink
SSHDataGrabber
STAPLEAnalysis
StdOutCommandLine (class in nipype.interfaces.base)
StdOutCommandLineInputSpec (class in nipype.interfaces.base)
StimulusCorrelation
Stream (class in nipype.interfaces.base)
StreamlineTrack
SubtractScalarVolumes
Surface2VolTransform
SurfaceSmooth
SurfaceSnapshots
SurfaceTransform
SUSAN
SVMTest
SVMTrain
SwapDimensions
sync_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
SynthesizeFLASH

T

TCat
TCK2VTK
TCorr1D
TCorrelate
TCorrMap
TemporalFilter
Tensor2ApparentDiffusion
Tensor2FractionalAnisotropy
Tensor2Vector
TensorMetrics
TensorMode
TextureFromNoiseImageFilter
TextureMeasureFilter
Threshold, [1], [2]
ThresholdScalarVolume
ThresholdStatistics
Tkregister2
To3D
TOPUP
Track
TrackBallStick
TrackBayesDirac
TrackBedpostxDeter
TrackBedpostxProba
TrackBootstrap
TrackDensityMap
TrackDT
TrackMerge
TrackPICo
Tracks2Prob
Trackvis2Camino
Tractography
TractographyLabelMapSeeding
TractShredder
TractSkeleton
trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_context() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_get() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_items_event() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_monitor() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_property_changed() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_set() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_setq() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_subclasses() (nipype.interfaces.base.BaseInterfaceInputSpec class method)
(nipype.interfaces.base.BaseTraitedSpec class method)
(nipype.interfaces.base.CommandLineInputSpec class method)
(nipype.interfaces.base.DynamicTraitedSpec class method)
(nipype.interfaces.base.MpiCommandLineInputSpec class method)
(nipype.interfaces.base.StdOutCommandLineInputSpec class method)
(nipype.interfaces.base.TraitedSpec class method)
(nipype.interfaces.matlab.MatlabInputSpec class method)
trait_view() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_view_elements() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_views() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
TraitedSpec (class in nipype.interfaces.base)
traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
traits_init() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
traits_inited() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Trim
TShift
TSNR
TStat
TwoSampleTTestDesign

U

UKFTractography
UnaryMaths
UnbiasedNonLocalMeans
UnpackSDICOMDir
update() (nipype.interfaces.base.Bunch method)
(nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)

V

validate() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
validate_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
VBMSegment
VBRAINSDemonWarp, [1]
VecReg
version (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
version_from_command() (nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
Vnifti2Image
Volreg
VotingBinaryHoleFillingImageFilter
VtkStreamlines
VtoMat

W

Warp
WarpImageMultiTransform
WarpPoints, [1]
WarpPointsToStd
WarpTimeSeriesImageMultiTransform
WarpUtils
WatershedBEM
workflow
Workflow (class in nipype.pipeline.engine)
WorkflowBase (class in nipype.pipeline.engine)
wrappers (nipype.interfaces.base.BaseInterfaceInputSpec attribute)
(nipype.interfaces.base.BaseTraitedSpec attribute)
(nipype.interfaces.base.CommandLineInputSpec attribute)
(nipype.interfaces.base.DynamicTraitedSpec attribute)
(nipype.interfaces.base.MpiCommandLineInputSpec attribute)
(nipype.interfaces.base.StdOutCommandLineInputSpec attribute)
(nipype.interfaces.base.TraitedSpec attribute)
(nipype.interfaces.matlab.MatlabInputSpec attribute)
write_graph() (nipype.pipeline.engine.Workflow method)
write_hierarchical_dotfile() (nipype.pipeline.engine.Workflow method)
write_report() (nipype.pipeline.engine.JoinNode method)
(nipype.pipeline.engine.MapNode method)
(nipype.pipeline.engine.Node method)

X

XFibres
XFibres4
XFibres5
XNATSink
XNATSource

Z

ZCutUp