Wraps command mne_watershed_bem
Uses mne_watershed_bem to get information from dicom directories
>>> from nipype.interfaces.mne import WatershedBEM
>>> bem = WatershedBEM()
>>> bem.inputs.subject_id = 'subj1'
>>> bem.inputs.subjects_dir = '.'
>>> bem.cmdline
'mne_watershed_bem --overwrite --subject subj1 --volume T1'
>>> bem.run()
Inputs:
[Mandatory]
subject_id: (a string)
Subject ID (must have a complete Freesurfer directory)
subjects_dir: (an existing directory name, nipype default value: )
Path to Freesurfer subjects directory
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
Control terminal output
[Optional]
args: (a string)
Additional parameters to the command
atlas_mode: (a boolean)
Use atlas mode for registration (default: no rigid alignment)
environ: (a dictionary with keys which are a value of type 'str' and with values which
are a value of type 'str', nipype default value: {})
Environment variables
ignore_exception: (a boolean, nipype default value: False)
Print an error message instead of throwing an exception in case the interface fails to
run
overwrite: (a boolean, nipype default value: True)
Overwrites the existing files
volume: ('T1' or 'aparc+aseg' or 'aseg' or 'brain' or 'orig' or 'brainmask' or 'ribbon',
nipype default value: T1)
The volume from the "mri" directory to use (defaults to T1)
Outputs:
brain_surface: (an existing file name)
Brain surface (in Freesurfer format)
cor_files: (an existing file name)
"COR" format files
fif_file: (an existing file name)
"fif" format file for EEG processing in MNE
inner_skull_surface: (an existing file name)
Inner skull surface (in Freesurfer format)
mesh_files: (an existing file name)
Paths to the output meshes (brain, inner skull, outer skull, outer skin)
outer_skin_surface: (an existing file name)
Outer skin surface (in Freesurfer format)
outer_skull_surface: (an existing file name)
Outer skull surface (in Freesurfer format)