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interfaces.slicer.quantification.changequantification

IntensityDifferenceMetric

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Wraps command **IntensityDifferenceMetric **

title:
Intensity Difference Change Detection (FAST)
category:
Quantification.ChangeQuantification
description:
Quantifies the changes between two spatially aligned images based on the pixel-wise difference of image intensities.

version: 0.1

contributor: Andrey Fedorov

acknowledgements:

Inputs:

[Mandatory]
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
        Control terminal output: `stream` - displays to terminal
        immediately, `allatonce` - waits till command is finished to display
        output, `file` - writes output to file, `none` - output is ignored

[Optional]
args: (a string)
        Additional parameters to the command
baselineSegmentationVolume: (an existing file name)
        Label volume that contains segmentation of the structure of interest
        in the baseline volume.
baselineVolume: (an existing file name)
        Baseline volume to be compared to
changingBandSize: (an integer)
        How far (in mm) from the boundary of the segmentation should the
        intensity changes be considered.
environ: (a dictionary with keys which are a value of type 'str' and
         with values which are a value of type 'str', nipype default value:
         {})
        Environment variables
followupVolume: (an existing file name)
        Followup volume to be compare to the baseline
ignore_exception: (a boolean, nipype default value: False)
        Print an error message instead of throwing an exception in case the
        interface fails to run
outputVolume: (a boolean or a file name)
        Output volume to keep the results of change quantification.
reportFileName: (a boolean or a file name)
        Report file name
sensitivityThreshold: (a float)
        This parameter should be between 0 and 1, and defines how sensitive
        the metric should be to the intensity changes.
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
        Control terminal output: `stream` - displays to terminal
        immediately, `allatonce` - waits till command is finished to display
        output, `file` - writes output to file, `none` - output is ignored

Outputs:

outputVolume: (an existing file name)
        Output volume to keep the results of change quantification.
reportFileName: (an existing file name)
        Report file name