OpenWalnut
1.4.0
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Represents a simple set of WFibers. More...
#include <WDataSetFibers.h>
Classes | |
class | ColorScheme |
Item used in the selection below also containing color info. More... | |
Public Types | |
typedef boost::shared_ptr < WDataSetFibers > | SPtr |
Pointer to dataset. | |
typedef boost::shared_ptr < const WDataSetFibers > | ConstSPtr |
Pointer to const dataset. | |
typedef boost::shared_ptr < std::vector< float > > | VertexArray |
List of vertex coordinates in term of components of vertices. | |
typedef boost::shared_ptr < std::vector< size_t > > | IndexArray |
Index list indexing fibers in VertexArray in terms of vertex numbers. | |
typedef boost::shared_ptr < std::vector< size_t > > | LengthArray |
Lengths of fibers in terms of vertices. | |
typedef boost::shared_ptr < std::vector< float > > | TangentArray |
Tangents at each vertex in VertexArray. | |
typedef boost::shared_ptr < std::vector< float > > | ColorArray |
Colors for each vertex in VertexArray. | |
typedef boost::shared_ptr < std::vector< double > > | VertexParemeterArray |
Parameter storage for each vertex. | |
typedef WFiberIterator | iterator |
Iterator to go through the fibers. | |
typedef WFiberIterator | const_iterator |
Const iterator to go through fibers. | |
Public Member Functions | |
WDataSetFibers (boost::shared_ptr< std::vector< float > >vertices, boost::shared_ptr< std::vector< size_t > > lineStartIndexes, boost::shared_ptr< std::vector< size_t > > lineLengths, boost::shared_ptr< std::vector< size_t > > verticesReverse, WBoundingBox boundingBox) | |
Constructs a new set of fibers. | |
WDataSetFibers (boost::shared_ptr< std::vector< float > >vertices, boost::shared_ptr< std::vector< size_t > > lineStartIndexes, boost::shared_ptr< std::vector< size_t > > lineLengths, boost::shared_ptr< std::vector< size_t > > verticesReverse) | |
Constructs a new set of fibers. | |
WDataSetFibers (boost::shared_ptr< std::vector< float > >vertices, boost::shared_ptr< std::vector< size_t > > lineStartIndexes, boost::shared_ptr< std::vector< size_t > > lineLengths, boost::shared_ptr< std::vector< size_t > > verticesReverse, WBoundingBox boundingBox, VertexParemeterArray vertexParameters) | |
Constructs a new set of fibers. | |
WDataSetFibers (boost::shared_ptr< std::vector< float > >vertices, boost::shared_ptr< std::vector< size_t > > lineStartIndexes, boost::shared_ptr< std::vector< size_t > > lineLengths, boost::shared_ptr< std::vector< size_t > > verticesReverse, VertexParemeterArray vertexParameters) | |
Constructs a new set of fibers. | |
WDataSetFibers () | |
Constructs a new set of tracts. | |
size_t | size () const |
Get number of tracts in this data set. | |
virtual bool | isTexture () const |
Determines whether this dataset can be used as a texture. | |
virtual const std::string | getName () const |
Gets the name of this prototype. | |
virtual const std::string | getDescription () const |
Gets the description for this prototype. | |
VertexArray | getVertices () const |
Getter for the lines' vertices. | |
IndexArray | getLineStartIndexes () const |
Return the indices that indicate at which vertex ID each line begins in the vertex array. | |
LengthArray | getLineLengths () const |
Return the number of vertices for all lines. | |
IndexArray | getVerticesReverse () const |
Returns a reverse lookup table that allow do find out which vertex belongs to which line. | |
TangentArray | getTangents () const |
Returns an array containing the tangents of the fibers at the vertices. | |
VertexParemeterArray | getVertexParameters () const |
Get the parameter values for each vertex. | |
void | addColorScheme (WDataSetFibers::ColorArray colors, std::string name, std::string description) |
This method adds a new color scheme to the list of available colors. | |
void | removeColorScheme (WDataSetFibers::ColorArray colors) |
This method removes the specified color scheme from the list and triggers an update. | |
void | replaceColorScheme (WDataSetFibers::ColorArray oldColors, WDataSetFibers::ColorArray newColors) |
Replaces the specified old color scheme by the new color scheme. | |
const boost::shared_ptr < ColorScheme > | getColorScheme (std::string name) const |
Get the color scheme with the specified name. | |
const boost::shared_ptr < ColorScheme > | getColorScheme (size_t idx) const |
Get the color scheme with the specified ID. | |
const boost::shared_ptr < ColorScheme > | getColorScheme () const |
Convenience method returning the currently selected scheme. | |
const WPropSelection | getColorSchemeProperty () const |
Returns the property controlling the color scheme selection. | |
WPosition | getPosition (size_t fiber, size_t vertex) const |
returns the position in space for a vertex of a given fiber | |
WPosition | getTangent (size_t fiber, size_t vertex) const |
calculates the tangent for a point on the fiber | |
WBoundingBox | getBoundingBox () const |
Get the bounding box. | |
WFiber | operator[] (size_t numTract) const |
Constructs a WFiber out of the given tract number. | |
const_iterator | begin () const |
Returns an iterator to the first fiber of the dataset. | |
const_iterator | end () const |
Returns an iterator pointing beyond the last fiber. | |
Static Public Member Functions | |
static boost::shared_ptr < WPrototyped > | getPrototype () |
Returns a prototype instantiated with the true type of the deriving class. | |
Static Protected Attributes | |
static boost::shared_ptr < WPrototyped > | m_prototype = boost::shared_ptr< WPrototyped >() |
The prototype as singleton. | |
Private Member Functions | |
void | init () |
This does the common initialisation of the constructors. | |
Private Attributes | |
VertexArray | m_vertices |
Point vector for all fibers. | |
TangentArray | m_tangents |
Point vector for tangents at each vertex, used for fake tubes. | |
boost::shared_ptr< WItemSelection > | m_colors |
An array of color arrays. | |
WPropSelection | m_colorProp |
Property keeping track of the active color in m_colors. | |
IndexArray | m_lineStartIndexes |
Line vector that contains the start index of its first point for each line. | |
LengthArray | m_lineLengths |
Line vector that contains the number of vertices for each line. | |
IndexArray | m_verticesReverse |
Reverse lookup table for which point belongs to which fiber. | |
WBoundingBox | m_bb |
Axis aligned bounding box for all tract-vertices of this dataset. | |
VertexParemeterArray | m_vertexParameters |
Parameter array. |
Represents a simple set of WFibers.
Definition at line 51 of file WDataSetFibers.h.
typedef boost::shared_ptr< std::vector< float > > WDataSetFibers::ColorArray |
Colors for each vertex in VertexArray.
Definition at line 88 of file WDataSetFibers.h.
Const iterator to go through fibers.
As the WFiberIterators does not allow any modifications per-se, the const iterator and the standard iterator are the same.
Definition at line 104 of file WDataSetFibers.h.
typedef boost::shared_ptr< const WDataSetFibers > WDataSetFibers::ConstSPtr |
Pointer to const dataset.
Reimplemented from WDataSet.
Definition at line 63 of file WDataSetFibers.h.
typedef boost::shared_ptr< std::vector< size_t > > WDataSetFibers::IndexArray |
Index list indexing fibers in VertexArray in terms of vertex numbers.
Definition at line 73 of file WDataSetFibers.h.
Iterator to go through the fibers.
Definition at line 98 of file WDataSetFibers.h.
typedef boost::shared_ptr< std::vector< size_t > > WDataSetFibers::LengthArray |
Lengths of fibers in terms of vertices.
Definition at line 78 of file WDataSetFibers.h.
typedef boost::shared_ptr< WDataSetFibers > WDataSetFibers::SPtr |
typedef boost::shared_ptr< std::vector< float > > WDataSetFibers::TangentArray |
Tangents at each vertex in VertexArray.
Definition at line 83 of file WDataSetFibers.h.
typedef boost::shared_ptr< std::vector< float > > WDataSetFibers::VertexArray |
List of vertex coordinates in term of components of vertices.
Definition at line 68 of file WDataSetFibers.h.
typedef boost::shared_ptr< std::vector< double > > WDataSetFibers::VertexParemeterArray |
Parameter storage for each vertex.
Definition at line 93 of file WDataSetFibers.h.
WDataSetFibers::WDataSetFibers | ( | boost::shared_ptr< std::vector< float > > | vertices, |
boost::shared_ptr< std::vector< size_t > > | lineStartIndexes, | ||
boost::shared_ptr< std::vector< size_t > > | lineLengths, | ||
boost::shared_ptr< std::vector< size_t > > | verticesReverse, | ||
WBoundingBox | boundingBox | ||
) |
Constructs a new set of fibers.
vertices | the vertices of the fibers, stored in x1,y1,z1,x2,y2,z2, ..., xn,yn,zn scheme |
lineStartIndexes | the index in which the fiber start (index of the 3D-vertex, not the index of the float in the vertices vector) |
lineLengths | how many vertices belong to a fiber |
verticesReverse | stores for each vertex the index of the corresponding fiber |
boundingBox | The bounding box of the fibers (first minimum, second maximum). |
Definition at line 51 of file WDataSetFibers.cpp.
References init(), and m_vertices.
WDataSetFibers::WDataSetFibers | ( | boost::shared_ptr< std::vector< float > > | vertices, |
boost::shared_ptr< std::vector< size_t > > | lineStartIndexes, | ||
boost::shared_ptr< std::vector< size_t > > | lineLengths, | ||
boost::shared_ptr< std::vector< size_t > > | verticesReverse | ||
) |
Constructs a new set of fibers.
This constructor determines the bounding box by using the coordinates of the vertices.
vertices | the vertices of the fibers, stored in x1,y1,z1,x2,y2,z2, ..., xn,yn,zn scheme |
lineStartIndexes | the index in which the fiber start (index of the 3D-vertex, not the index of the float in the vertices vector) |
lineLengths | how many vertices belong to a fiber |
verticesReverse | stores for each vertex the index of the corresponding fiber |
Definition at line 67 of file WDataSetFibers.cpp.
References WBoundingBoxImpl< VT >::expandBy(), init(), m_bb, and m_vertices.
WDataSetFibers::WDataSetFibers | ( | boost::shared_ptr< std::vector< float > > | vertices, |
boost::shared_ptr< std::vector< size_t > > | lineStartIndexes, | ||
boost::shared_ptr< std::vector< size_t > > | lineLengths, | ||
boost::shared_ptr< std::vector< size_t > > | verticesReverse, | ||
WBoundingBox | boundingBox, | ||
WDataSetFibers::VertexParemeterArray | vertexParameters | ||
) |
Constructs a new set of fibers.
vertices | the vertices of the fibers, stored in x1,y1,z1,x2,y2,z2, ..., xn,yn,zn scheme |
lineStartIndexes | the index in which the fiber start (index of the 3D-vertex, not the index of the float in the vertices vector) |
lineLengths | how many vertices belong to a fiber |
verticesReverse | stores for each vertex the index of the corresponding fiber |
boundingBox | The bounding box of the fibers (first minimum, second maximum). |
vertexParameters | optional per-vertex scalar. |
Definition at line 87 of file WDataSetFibers.cpp.
References init(), and m_vertices.
WDataSetFibers::WDataSetFibers | ( | boost::shared_ptr< std::vector< float > > | vertices, |
boost::shared_ptr< std::vector< size_t > > | lineStartIndexes, | ||
boost::shared_ptr< std::vector< size_t > > | lineLengths, | ||
boost::shared_ptr< std::vector< size_t > > | verticesReverse, | ||
WDataSetFibers::VertexParemeterArray | vertexParameters | ||
) |
Constructs a new set of fibers.
This constructor determines the bounding box by using the coordinates of the vertices.
vertices | the vertices of the fibers, stored in x1,y1,z1,x2,y2,z2, ..., xn,yn,zn scheme |
lineStartIndexes | the index in which the fiber start (index of the 3D-vertex, not the index of the float in the vertices vector) |
lineLengths | how many vertices belong to a fiber |
verticesReverse | stores for each vertex the index of the corresponding fiber |
vertexParameters | optional per-vertex scalar. |
Definition at line 105 of file WDataSetFibers.cpp.
References WBoundingBoxImpl< VT >::expandBy(), init(), m_bb, and m_vertices.
Constructs a new set of tracts.
The constructed instance is not usable but needed for prototype mechanism.
Definition at line 45 of file WDataSetFibers.cpp.
Referenced by getPrototype().
void WDataSetFibers::addColorScheme | ( | WDataSetFibers::ColorArray | colors, |
std::string | name, | ||
std::string | description | ||
) |
This method adds a new color scheme to the list of available colors.
The color scheme needs to have a name and description to allow the user to identify which color has which meaning. If the specified color array already exists, only an update is triggered and the name and description is ignored. It detects the type of colors by its size.
colors | the color array. Needs to have exactly getVertices()->size() items. |
name | name of the color scheme. Should be a telling name. |
description | description. How calculated and so on. |
Definition at line 244 of file WDataSetFibers.cpp.
References WDataSetFibers::ColorScheme::GRAY, m_colors, m_vertices, WDataSetFibers::ColorScheme::RGB, and WDataSetFibers::ColorScheme::RGBA.
Returns an iterator to the first fiber of the dataset.
The iterator does not allow any modification of the data.
Definition at line 385 of file WDataSetFibers.cpp.
Returns an iterator pointing beyond the last fiber.
The iterator does not allow any modification of the data.
Definition at line 390 of file WDataSetFibers.cpp.
References m_lineLengths.
WBoundingBox WDataSetFibers::getBoundingBox | ( | ) | const |
Get the bounding box.
Definition at line 366 of file WDataSetFibers.cpp.
References m_bb.
const boost::shared_ptr< WDataSetFibers::ColorScheme > WDataSetFibers::getColorScheme | ( | std::string | name | ) | const |
Get the color scheme with the specified name.
If it is not found, an exception gets thrown.
name | the name of the color scheme |
WDHNoSuchDataSet | if the name could not be found. |
Definition at line 299 of file WDataSetFibers.cpp.
References m_colors.
Referenced by WFiberPointsIterator::getColor().
const boost::shared_ptr< WDataSetFibers::ColorScheme > WDataSetFibers::getColorScheme | ( | size_t | idx | ) | const |
Get the color scheme with the specified ID.
If the index is invalid, an exception gets thrown.
idx | the index |
Definition at line 313 of file WDataSetFibers.cpp.
References m_colors.
const boost::shared_ptr< WDataSetFibers::ColorScheme > WDataSetFibers::getColorScheme | ( | ) | const |
Convenience method returning the currently selected scheme.
This is a comfortable alternative to using the color scheme selection property.
Definition at line 319 of file WDataSetFibers.cpp.
References m_colorProp.
const WPropSelection WDataSetFibers::getColorSchemeProperty | ( | ) | const |
Returns the property controlling the color scheme selection.
Definition at line 324 of file WDataSetFibers.cpp.
References m_colorProp.
const std::string WDataSetFibers::getDescription | ( | ) | const [virtual] |
Gets the description for this prototype.
Reimplemented from WDataSet.
Definition at line 204 of file WDataSetFibers.cpp.
Return the number of vertices for all lines.
Definition at line 229 of file WDataSetFibers.cpp.
References m_lineLengths.
Referenced by WFiberPointsIterator::getBaseIndex(), and WFiberIterator::numPoints().
Return the indices that indicate at which vertex ID each line begins in the vertex array.
Definition at line 224 of file WDataSetFibers.cpp.
References m_lineStartIndexes.
Referenced by WFiberPointsIterator::getBaseIndex(), and WFiberIterator::getLineStartIndex().
const std::string WDataSetFibers::getName | ( | ) | const [virtual] |
Gets the name of this prototype.
Reimplemented from WDataSet.
Definition at line 199 of file WDataSetFibers.cpp.
WPosition WDataSetFibers::getPosition | ( | size_t | fiber, |
size_t | vertex | ||
) | const |
returns the position in space for a vertex of a given fiber
fiber | Index of fiber |
vertex | Index of vertex in fiber. |
Definition at line 334 of file WDataSetFibers.cpp.
References m_lineStartIndexes, and m_vertices.
Referenced by getTangent().
boost::shared_ptr< WPrototyped > WDataSetFibers::getPrototype | ( | ) | [static] |
Returns a prototype instantiated with the true type of the deriving class.
Reimplemented from WDataSet.
Definition at line 209 of file WDataSetFibers.cpp.
References m_prototype, and WDataSetFibers().
WPosition WDataSetFibers::getTangent | ( | size_t | fiber, |
size_t | vertex | ||
) | const |
calculates the tangent for a point on the fiber
fiber | Index of fiber |
vertex | Index of vertex in fiber |
Definition at line 341 of file WDataSetFibers.cpp.
References getPosition(), and m_lineLengths.
Returns an array containing the tangents of the fibers at the vertices.
Definition at line 239 of file WDataSetFibers.cpp.
References m_tangents.
Referenced by WFiberPointsIterator::getTangent().
Get the parameter values for each vertex.
Same indexing as vertices. Used to store additional scalar values for each vertex.
Definition at line 329 of file WDataSetFibers.cpp.
References m_vertexParameters.
Referenced by WFiberPointsIterator::getParameter().
Getter for the lines' vertices.
Definition at line 219 of file WDataSetFibers.cpp.
References m_vertices.
Referenced by WFiberPointsIterator::operator*().
Returns a reverse lookup table that allow do find out which vertex belongs to which line.
Definition at line 234 of file WDataSetFibers.cpp.
References m_verticesReverse.
void WDataSetFibers::init | ( | ) | [private] |
This does the common initialisation of the constructors.
Definition at line 127 of file WDataSetFibers.cpp.
References WPropertyHelper::PC_SELECTONLYONE::addTo(), WPropertyHelper::PC_NOTEMPTY::addTo(), m_colorProp, m_colors, WDataSet::m_infoProperties, m_lineLengths, WDataSet::m_properties, m_tangents, m_vertices, WDataSetFibers::ColorScheme::RGB, WThreadedRunner::run(), size(), and WThreadedRunner::wait().
Referenced by WDataSetFibers().
bool WDataSetFibers::isTexture | ( | ) | const [virtual] |
Determines whether this dataset can be used as a texture.
Reimplemented from WDataSet.
Definition at line 189 of file WDataSetFibers.cpp.
Constructs a WFiber out of the given tract number.
numTract | Number of the tract to generate a WFiber object for |
Definition at line 371 of file WDataSetFibers.cpp.
References m_lineLengths, m_vertices, WMixinVector< ValueT >::push_back(), WMixinVector< ValueT >::reserve(), and size().
void WDataSetFibers::removeColorScheme | ( | WDataSetFibers::ColorArray | colors | ) |
This method removes the specified color scheme from the list and triggers an update.
colors | the color array. |
Definition at line 266 of file WDataSetFibers.cpp.
References m_colors.
void WDataSetFibers::replaceColorScheme | ( | WDataSetFibers::ColorArray | oldColors, |
WDataSetFibers::ColorArray | newColors | ||
) |
Replaces the specified old color scheme by the new color scheme.
If the old color scheme did not exist, nothing happens.
oldColors | old colors to remove |
newColors | new colors to set |
Definition at line 285 of file WDataSetFibers.cpp.
References m_colors, and WDataSetFibers::ColorScheme::setColor().
size_t WDataSetFibers::size | ( | ) | const |
Get number of tracts in this data set.
Definition at line 194 of file WDataSetFibers.cpp.
References m_lineStartIndexes.
Referenced by init(), and operator[]().
WBoundingBox WDataSetFibers::m_bb [private] |
Axis aligned bounding box for all tract-vertices of this dataset.
Definition at line 482 of file WDataSetFibers.h.
Referenced by getBoundingBox(), and WDataSetFibers().
WPropSelection WDataSetFibers::m_colorProp [private] |
Property keeping track of the active color in m_colors.
Definition at line 460 of file WDataSetFibers.h.
Referenced by getColorScheme(), getColorSchemeProperty(), and init().
boost::shared_ptr< WItemSelection > WDataSetFibers::m_colors [private] |
An array of color arrays.
The first two elements are: 0: global color, 1: local color
Definition at line 455 of file WDataSetFibers.h.
Referenced by addColorScheme(), getColorScheme(), init(), removeColorScheme(), and replaceColorScheme().
LengthArray WDataSetFibers::m_lineLengths [private] |
Line vector that contains the number of vertices for each line.
Definition at line 472 of file WDataSetFibers.h.
Referenced by end(), getLineLengths(), getTangent(), init(), and operator[]().
IndexArray WDataSetFibers::m_lineStartIndexes [private] |
Line vector that contains the start index of its first point for each line.
Definition at line 467 of file WDataSetFibers.h.
Referenced by getLineStartIndexes(), getPosition(), and size().
boost::shared_ptr< WPrototyped > WDataSetFibers::m_prototype = boost::shared_ptr< WPrototyped >() [static, protected] |
The prototype as singleton.
Reimplemented from WDataSet.
Definition at line 434 of file WDataSetFibers.h.
Referenced by getPrototype().
TangentArray WDataSetFibers::m_tangents [private] |
Point vector for tangents at each vertex, used for fake tubes.
Definition at line 450 of file WDataSetFibers.h.
Referenced by getTangents(), and init().
Parameter array.
Used to store additional scalar values for each vertex.
Definition at line 487 of file WDataSetFibers.h.
Referenced by getVertexParameters().
VertexArray WDataSetFibers::m_vertices [private] |
Point vector for all fibers.
Definition at line 445 of file WDataSetFibers.h.
Referenced by addColorScheme(), getPosition(), getVertices(), init(), operator[](), and WDataSetFibers().
IndexArray WDataSetFibers::m_verticesReverse [private] |
Reverse lookup table for which point belongs to which fiber.
Definition at line 477 of file WDataSetFibers.h.
Referenced by getVerticesReverse().